PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1572

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 885aa MW: 97326.3 Da PI: 7.3887

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1572	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	340	439	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae+h ++++e+ l+++d++g++W +++++ +++s++yvl+ G + ++++gD+v+F++ + +++lv+ Gh_D05G1572 340 FEKMLSASDAGRIGRLVLPKKCAEAHfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDVVTFSRLE-PGGKLVM 435 89************************555566778***********99899999999.*******************665.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Gh_D05G1572 436 GFRK 439 7776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.31E-19	337	439	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-29	337	445	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.18E-22	338	439	No hit	No description
Pfam	PF02362	1.8E-15	340	439	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-19	340	441	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.828	340	441	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.401	567	617	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.1E-12	572	614	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL 60 NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS 120 SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LHSRVPYEVD LSTGIDRLNV 180 CDRLSTPSLE KKKVEDFSER LMNGTWKPGT RDIHEKGNAG INCEEQHNPC LTKFQSSLKE 240 EPNPQFGLAV SYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG 300 RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK 360 CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD 420 VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY 480 IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPANHVASVV 540 VIEGFEFEEY EDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN 600 SWDPERSSCS AIQELTAEQL ENLLPQCNPA ASKKMKAAKQ ETENVDALEG LDTLANLAIL 660 GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM 720 RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKPIKIASE GSEDDPNRVK 780 SSILPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDATD KHLRQQSTLT SGGNSNSEVS 840 QTQPGGGPEG EKISNSVNLG ASHQDIDRDH PVFSIKTSAP TSATG

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MTSTPGAASS SKICFNSDCK DLKSEIPRKG WRLRTGEFAE LCDRCAFAFE EGRFCDTFHL  60
NASGWRTCES CGKRVHCGCI VSVHAFTLLD AGGIECVACA RKNVVMGSSS SWSPSLIFHS  120
SLSERFKEYS AKGWTQLAGS GPVPWRQAPS LFNSPVTQPE LHSRVPYEVD LSTGIDRLNV  180
CDRLSTPSLE KKKVEDFSER LMNGTWKPGT RDIHEKGNAG INCEEQHNPC LTKFQSSLKE  240
EPNPQFGLAV SYTSPDEANG QNGVSGTHLR PNPQPPLAKQ FHSNLQNGTD SSGETQIRNG  300
RPRPDGRGKN NLFPRYWPRF TDQDLQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK  360
CAEAHFPPIS QPEGLPLKVQ DSKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQNMQVQAGD  420
VVTFSRLEPG GKLVMGFRKA STASASDQDN EAKNSNGLSM HGDAEMADPT SWSKVDKSGY  480
IAKEALGAKV AVSRKRKNSM LGSKSKRLRI DNEDLIELKL TWEEAQGLLR PPANHVASVV  540
VIEGFEFEEY EDAPILGKPT IFATDNMGEK IQWAQCEDCF KWRRLPSNVL LPSKWTCSSN  600
SWDPERSSCS AIQELTAEQL ENLLPQCNPA ASKKMKAAKQ ETENVDALEG LDTLANLAIL  660
GEGESLPTSS QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCET VKRRFRTLMM  720
RREKKQSQKE AETTSKKQQT SLPDKVPDDD PPPCTNAENS SPKPIKIASE GSEDDPNRVK  780
SSILPFKGQI DLNIQPEREE ELSPGSDSGS MMRLLQDATD KHLRQQSTLT SGGNSNSEVS  840
QTQPGGGPEG EKISNSVNLG ASHQDIDRDH PVFSIKTSAP TSATG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	8e-64	318	443	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13624	0.0	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709802.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1U8L5B0	0.0	A0A1U8L5B0_GOSHI; B3 domain-containing protein Os07g0563300-like isoform X1
STRING	Gorai.009G173100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6857	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-165	HSI2-like 1