PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 319aa MW: 34673.1 Da PI: 9.5261 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.6e-38 | 35 | 93 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Gh_D05G1527 35 HPPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93 56789**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 29 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-32 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MQQDRGGRGS EQGMKQNQQQ DQRLKPLTGE NQQQHPPQKC PRCESLNTKF CYYNNYSLSQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTKVSSSGE NSRSQPLIPQ QQAAQQHSLT 120 SPQSMISSNP MISVSAAFRT KESGSLASSS AIPSVGSYYP AGFMSSLAAV QSMNQPQPFN 180 QPLNQALSMG GDLGGSSNLG LLQGYGVPSF GSQQHQPSQQ TQFFPMVDRD QKTVNMYPSD 240 HERLIQSSRL AAGNSSEQNW HQSFINNSDP TASEAALWSM NNNSSSSTSS AGNTNTSNTT 300 AASLNPNQWP DLPGYGAPP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688038.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_016688039.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
TrEMBL | A0A1U8JI92 | 0.0 | A0A1U8JI92_GOSHI; dof zinc finger protein DOF1.8-like | ||||
STRING | Gorai.009G168400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15986 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-33 | OBF binding protein 4 |