PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 743aa MW: 81125.3 Da PI: 7.425 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.5e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el Gh_D05G1506 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGENGEL 241 99****************************963.3445679************************************************..4499999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Gh_D05G1506 242 RLGIRRA 248 ****996 PP | |||||||
2 | Auxin_resp | 113.3 | 2.3e-37 | 273 | 355 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnP.rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++ha+s+ksvF+++YnP ras+seF+++v+k+ k+l++++svGmRfkm+fe+ed++e r++G+v+g+s++dpvrW++SkWr+L Gh_D05G1506 273 VVHAISMKSVFSIYYNPsRASSSEFIIPVHKFWKSLDHSFSVGMRFKMRFESEDAAEGRYTGVVTGISEMDPVRWSGSKWRCL 355 689**************7799*************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-42 | 140 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-40 | 141 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-22 | 145 | 247 | No hit | No description |
SMART | SM01019 | 1.2E-23 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.549 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-32 | 273 | 355 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MGGLIDLNTT EDEETPSSGS LSPSSSSASV LSASGSASSS PVCLELWHAC AGPLISLPKR 60 GSVVVYFPQG HLEQVSDFSG VAPAHDLPPH VFCRVVDVKL HAEGATDEVY AQVSLVPENE 120 KLKEGNIEVD GEEDAEADIK STTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYNQ 180 QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA VLFLRGENGE 240 LRLGIRRAAH IKNGTSFHSL CTQQLNRSNF ADVVHAISMK SVFSIYYNPS RASSSEFIIP 300 VHKFWKSLDH SFSVGMRFKM RFESEDAAEG RYTGVVTGIS EMDPVRWSGS KWRCLLVRWD 360 DIDANRHNRV SPWEIEPSSS ISSSNSSLSP GSKRNRVGLP SGKPEFMVPE GIGASDFGES 420 LRFQKVLQGQ EILGFNTHHD GANSQIMHRS EISRRFPCSN GSGIAAIRNI GRDTLVNPDI 480 SYKGVGFEES FRFQKVLQGQ ETSVSPPCRR GPTADDTRES DSPGAPDVGQ LSGTRSGWSS 540 LMQSYNTHSH IGPSAQVSSP SSVLKFQHAS NPFANVNPIH NLNSQEKERR VHKSSSFHAP 600 ETYGDRIPSS TGGHGSRRRH LGSLDSFGPS ADTVQLGDSQ PLSAQPTFRT SQELASSCKS 660 SCRLFGFSLT EGGHDAAKED NMVQATSSLG AGAFLPRIGE QFNTQPPAVT NTVGSSYTKG 720 ILQLCLKNYD DRARRCMHAY SLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-118 | 35 | 384 | 12 | 361 | Auxin response factor 1 |
4ldy_B | 1e-118 | 35 | 384 | 12 | 361 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24544 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected during gynoecium development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444769.1 | 0.0 | PREDICTED: auxin response factor 3 isoform X4 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A0D2TL70 | 0.0 | A0A0D2TL70_GOSRA; Auxin response factor | ||||
STRING | Gorai.009G166100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4924 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |