PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 378aa MW: 41940.7 Da PI: 4.7908 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 108 | 158 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Gh_D05G1351 108 SQYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 158 78********.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-22 | 108 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.23E-32 | 108 | 167 | No hit | No description |
Pfam | PF00847 | 8.4E-12 | 108 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.947 | 109 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-36 | 109 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MCGGAIISDF IAPVRSRRLT ADYLWPDLRK SQSKKASSNR YSKPAIDFTD NFEADFQDFK 60 DDKSDIEDYD VDDVLADAKP FAFSAAKKAS STVSHAQAEK SAKRKRKSQY RGIRQRPWGK 120 WAAEIRDPRK GVRVWLGTFN TAEEAARAYD SEARRIRGKK AKVNFPDEMP RTSPKRVIKT 180 NDEKPLPMSN LSPVEPNINQ NFNCLNKPEQ VFYDTMGFVE EKAPMDPFAY VDTVPAAVDV 240 GLKPFGQSDN TPLYFGSDQG STSFDCSDFG WGEHGAKTPE ISSALEATMD GDDFLVDANP 300 KKKLKPSSEN VMPIEDNSAE SLSDELLALG DQMKYPFLEG NWDATLDALL NGDASQYGGA 360 LTDLWSFGDF PAVAGGHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 108 | 168 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9124 | 0.0 | boll| embryo| ovule| root |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ372577 | 1e-140 | DQ372577.1 Gossypium hirsutum isolate vdrg18 disease resistance-related mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688369.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1U8JJ91 | 0.0 | A0A1U8JJ91_GOSHI; ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | Gorai.009G147300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 7e-74 | related to AP2 12 |