PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 783aa MW: 86638.3 Da PI: 6.7067 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.1 | 2.2e-21 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Gh_D05G1246 103 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158 7999************************************************9877 PP | |||||||
2 | START | 230.7 | 4.1e-72 | 273 | 496 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 + ++a++el+k+a+a+ep+Wv+s+ e++n+de++++f + + +s+ea+r++gvv+ +l++lv++++d + qW+e+++ ka+t++vi Gh_D05G1246 273 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYVKEFFVESSsngrpkRSIEASRETGVVFLDLPRLVQSFMDAN-QWKEMFPciisKAATVDVI 369 56789**********************************954444689******************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 + g ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++i++k ngh+kv+wveh ++++++ Gh_D05G1246 370 CHGeapnknGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIQDKTNGHCKVIWVEHLECQKNT 466 *********************************************************98.9************************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h l+r +v+sgla+ga++w+atlq+qce+ Gh_D05G1246 467 VHTLFRTIVRSGLAFGARHWMATLQHQCER 496 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 90 | 154 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-20 | 92 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-19 | 102 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-18 | 103 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.72E-17 | 107 | 158 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.697 | 263 | 499 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.65E-34 | 265 | 496 | No hit | No description |
CDD | cd08875 | 4.00E-113 | 267 | 495 | No hit | No description |
SMART | SM00234 | 1.1E-72 | 272 | 496 | IPR002913 | START domain |
Pfam | PF01852 | 5.3E-58 | 273 | 496 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.3E-5 | 314 | 495 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.06E-12 | 526 | 616 | No hit | No description |
SuperFamily | SSF55961 | 2.06E-12 | 650 | 770 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
MGVVDMTNPP TKDFFASPAL SLSLAGIFRD AGATAAAPTA SASMEVEEGD EGSGGGGGSG 60 SKKDDTVEIS SENSGPARSR SEDDLLDHDD DENDADKSKK KKRKKYHRHT ADQIREMEAL 120 FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK QELDKLRDEN 180 KAMRETINKA CCLNCGMATT AKDGSITAEE QQLRIENAKL KAEVEKLRTV IGKYPPGAST 240 TGSCSSGNDQ ENRSSLDFYT GIFGLEKSRI MEIVNQAMEE LQKMATAGEP LWVRSVETGR 300 EILNYDEYVK EFFVESSSNG RPKRSIEASR ETGVVFLDLP RLVQSFMDAN QWKEMFPCII 360 SKAATVDVIC HGEAPNKNGA VQLMFAELQM LTPLVPTREV YFVRYCKQLS AEQWAIVDVS 420 IDKVEENIDA SLVKCRKRPS GCIIQDKTNG HCKVIWVEHL ECQKNTVHTL FRTIVRSGLA 480 FGARHWMATL QHQCERLVFF MATNVPTKDS TGVATLAGRK SILKLAQRMT WSFCHSIGAS 540 SYHTWNKVST KTGEDIRVSS RKNLNDPGEP HGVIVCAVSS VWLPVSPTLL FDFLRDESRR 600 SEWDIMSNGG PVQSIANLAK GKDRGNAVTI QVSSSGCFFP LLTVYNILNC IMFSVQAMKS 660 KENSMWVLQD SCTNAFESMV VFAHVDVTGI QSVITGCDSS NMAILPSGFS ILPDGLESRP 720 LVISSRHEKS NDTEGGSLLT VAFQILTNSS PTAKLTMESV ESVNTIVSCT LRNIKTSLQC 780 EDG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | KKKKRK |
2 | 98 | 104 | KKKKRKK |
3 | 100 | 104 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.17123 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF530913 | 0.0 | AF530913.1 Gossypium hirsutum homeodomain protein GhHOX1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012442963.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Refseq | XP_012442964.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0D2S072 | 0.0 | A0A0D2S072_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G135100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12370 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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