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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D05G1227 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 274aa MW: 31493.1 Da PI: 4.686 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 38.9 | 2.3e-12 | 48 | 124 | 10 | 86 |
trihelix 10 LiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
L++a + + +r+ l+ W+ev++k+++ + er+ +qC ++++ l+k+ykk+k++ + ts ++s+++yf++++
Gh_D05G1227 48 LLNAWGGRFLQRGRNGLRSEEWQEVAEKVSKVSMiERTDTQCCNRLDTLKKKYKKEKAMLAE-TSATTSKWVYFKKVD 124
555555555666778899***********777666**************************9.578888******986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 5.9E-16 | 46 | 125 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 274 aa Download sequence Send to blast |
MDNEDDDELD DGEDDDDDGS DKPKGYNENS NDVDLERHPK KRKLKNLLLN AWGGRFLQRG 60 RNGLRSEEWQ EVAEKVSKVS MIERTDTQCC NRLDTLKKKY KKEKAMLAET SATTSKWVYF 120 KKVDMLMSTP PQQGGLSCGM DLGEPIFVNP RAYSNCANGM DKMRDSPADS ESADSDEDIS 180 DGLPPKKRRF GRQYDEGSSF RMLADSIHKF SNIYEKIENS KRHQMLELEK MRMEIHMELE 240 MQKRRIMENA QAEIVKIQQG DEEDNDVSIE NASG |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021298577.1 | 1e-135 | trihelix transcription factor ASIL2-like | ||||
| TrEMBL | A0A2P5RKT7 | 1e-162 | A0A2P5RKT7_GOSBA; Uncharacterized protein | ||||
| STRING | EOY26726 | 1e-134 | (Theobroma cacao) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM15605 | 9 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G24490.1 | 7e-47 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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