PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G1063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 461aa MW: 49490.8 Da PI: 4.7159 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.6e-31 | 241 | 299 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Gh_D05G1063 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 299 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-31 | 234 | 301 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 235 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 238 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 240 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-26 | 242 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MFVSLHMDNY QGEGDLNDIV RASGGGPLSC ATGHGSNTVP ASSWQQFPSD PLNFPSSAME 60 DHGLNAFGDP FSAMRDPLLH ELDVAAGCSA YFSSPNSTDH IINTTSSATV EADTCNFSGS 120 STMVGQGKLF EEDMPSPCNI FSRIQISASS SKLPVSPCDS PMMAACVSPR GIKAPAVLPS 180 DMINANTSKS CLIDSTGPLQ ISSPRNLGIK RRLGKSQVKK VVCIPAPAAA NSRSSGEVVP 240 SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW 300 PTQRNALAGS TRSQPSKNNN NNAAASKITS PRSQTQNAVT PKEEDLKESS NDALSPTVAA 360 VNSTASASAK EESEDMEKQL EIDDAEFGEG IPETYRPALM AGDSQQPEDF FAELDEIETD 420 PLNLLFPQGF GGGDQDEQKE KKIMDPFGLF DWPPGNNDAS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-26 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-26 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23597 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438458 | 0.0 | KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445939.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 isoform X1 | ||||
TrEMBL | A0A0D2QE11 | 0.0 | A0A0D2QE11_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G116800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-101 | WRKY DNA-binding protein 35 |