PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0993

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 802aa MW: 88583.7 Da PI: 6.7703

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0993	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	603	640	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Gh_D05G0993 603 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 640 664459******************************87 PP
2	BELL	100	1.8e-32	463	532	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q+kkakL+ + eeV++ Yk y++q+q+v+ssFe vaglg+a+pY+ lAlk+++r+FrcL+ ai +qi Gh_D05G0993 463 HEYQQKKAKLVYMHEEVCRTYKLYHQQMQMVVSSFESVAGLGAATPYVPLALKTVARNFRCLRIAILDQI 532 799*****************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.0E-45	396	530	IPR006563	POX domain
Pfam	PF07526	4.9E-40	401	528	IPR006563	POX domain
PROSITE profile	PS50071	12.212	581	644	IPR001356	Homeobox domain
SMART	SM00389	4.1E-8	584	648	IPR001356	Homeobox domain
CDD	cd00086	1.02E-11	584	645	No hit	No description
SuperFamily	SSF46689	7.27E-17	585	651	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	587	648	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	601	640	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MDMSKFRPES HVAQQRLRDK LRIQQSSKLV QQLEDFPNNL EDGCSSVHPA LNPGLVHVRN 60 VRNDNLLYDP DVFSSDIIHV SSNSSVLPSQ RDPILHQEMQ TAPENRQLLA EESSFPGMSQ 120 SNLSKFDASS KVSSDPHDCG NLRGVDSEHN CDWMVGYASG LAGSESNQDP RFVGEVISNN 180 ARILNSAYQD VQSTHPNPGS EIYCLERNLH FVSPSLYQNS LQDVVTTAQG LEVGSHEPQN 240 VREAARGLRI DYCGNEANPL HFGNAGTWMN TPLGEQSQQW GAELGFLASK SSVELGAAAS 300 DATTHGLSLS LSSHPTPKIC GADPVQFTGS QYCSDGFHSK PGEFKELRDS KTSNLGHFFS 360 MQKSSSTSKA DGKSLQDAGG TSAYVHRQTI PLGPFTGYAT ILKNSRFLKP AQELLDEFCH 420 LSNSKPVKVC DTCEGNPGEV SACKESNSGA SATFYSSNES CKHEYQQKKA KLVYMHEEVC 480 RTYKLYHQQM QMVVSSFESV AGLGAATPYV PLALKTVARN FRCLRIAILD QIKHVSRALG 540 EDLLSPTTGT SGSKGDINMS RLKCFGQKSG GVNMGFLEPQ QHSWRPQRGL PERSVAILRA 600 WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLESKCLAEG 660 NQNLSKSEGK STSEGRISCP NDGQSINRSC VNALSDKQLA CADMLVADAH DLEHWNHEKR 720 SSMDFHIPTS MEGSLMGFAP YQQSRLENGG LGAVSLTLGL MHGVESAQQQ QQQQRQQQQQ 780 YQQQEHHSRR QFGGHLIHDF AG

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MDMSKFRPES HVAQQRLRDK LRIQQSSKLV QQLEDFPNNL EDGCSSVHPA LNPGLVHVRN  60
VRNDNLLYDP DVFSSDIIHV SSNSSVLPSQ RDPILHQEMQ TAPENRQLLA EESSFPGMSQ  120
SNLSKFDASS KVSSDPHDCG NLRGVDSEHN CDWMVGYASG LAGSESNQDP RFVGEVISNN  180
ARILNSAYQD VQSTHPNPGS EIYCLERNLH FVSPSLYQNS LQDVVTTAQG LEVGSHEPQN  240
VREAARGLRI DYCGNEANPL HFGNAGTWMN TPLGEQSQQW GAELGFLASK SSVELGAAAS  300
DATTHGLSLS LSSHPTPKIC GADPVQFTGS QYCSDGFHSK PGEFKELRDS KTSNLGHFFS  360
MQKSSSTSKA DGKSLQDAGG TSAYVHRQTI PLGPFTGYAT ILKNSRFLKP AQELLDEFCH  420
LSNSKPVKVC DTCEGNPGEV SACKESNSGA SATFYSSNES CKHEYQQKKA KLVYMHEEVC  480
RTYKLYHQQM QMVVSSFESV AGLGAATPYV PLALKTVARN FRCLRIAILD QIKHVSRALG  540
EDLLSPTTGT SGSKGDINMS RLKCFGQKSG GVNMGFLEPQ QHSWRPQRGL PERSVAILRA  600
WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLESKCLAEG  660
NQNLSKSEGK STSEGRISCP NDGQSINRSC VNALSDKQLA CADMLVADAH DLEHWNHEKR  720
SSMDFHIPTS MEGSLMGFAP YQQSRLENGG LGAVSLTLGL MHGVESAQQQ QQQQRQQQQQ  780
YQQQEHHSRR QFGGHLIHDF AG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	590	648	5	63	Homeobox protein Meis2
4xrm_B	1e-15	590	648	5	63	Homeobox protein Meis2
4xrs_A	1e-15	590	647	1	58	Homeobox protein Meis1
4xrs_B	1e-15	590	647	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11213	0.0	stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964539	1e-143	JX964539.1 Gossypium hirsutum clone NBRI_TRANS-808 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016688701.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_016688702.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
TrEMBL	A0A1U8JEE6	0.0	A0A1U8JEE6_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.009G109300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14321	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	2e-88	BEL1-like homeodomain 8