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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D05G0721 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SRS |
| Protein Properties |
Length: 339aa MW: 35880.8 Da PI: 8.5677 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D05G0721 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 206.5 | 7.2e-64 | 131 | 291 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss.aeskke 99
+a+CqdCGnqakkdC+++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+ ++++++
Gh_D05G0721 131 SGATCQDCGNQAKKDCSYKRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGLSgSTAGPKKPRLRTS-QTTTASHTSTSNaTTPPRS 227
5679*********************************************99888777766655547888888888755.5555555555551556788 PP
DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
l+t s lP++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++
Gh_D05G0721 228 LDTCSspqnaefkepLPAQVRATAVFKCVRVTAIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 291
88888899******************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DPTALGVGVI PLLTAAPCLA 60
PHHAEDTDLL NNNDRSKFTG MRLWQNPNSS HYLIKSSSNP NNHNSSSMNL IQSSGGIGGT 120
GSGSGGSGLS SGATCQDCGN QAKKDCSYKR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180
LMTVGATAAG AGLSGSTAGP KKPRLRTSQT TTASHTSTSN ATTPPRSLDT CSSPQNAEFK 240
EPLPAQVRAT AVFKCVRVTA IEEGEDEFAY EAVVKIGGHV FKGLLYDQGV DGFPNISQLH 300
LSGRNGESSS SPVLDPSQVY EATTGGGLLR GSNYGSTRN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 3e-73 | Lateral root primordium (LRP) protein-related |
