PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0635

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 335aa MW: 36956.1 Da PI: 6.5028

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0635	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.8	1e-08	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++ fC+ ++ +lC +C +++H Gh_D05G0635 4 KLCDSCKSATATVFCRADSAFLCSNCDSKIHAA 36 68*****************************54 PP
2	zf-B_box	24.5	5.6e-08	46	90	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + lC +C +H+ H++ p Gh_D05G0635 46 VWVCEVCEQAPAHVTCKADAAALCITCDRDIHSAnplasrHERLP 90 689*****************************6688888898876 PP
3	CCT	69.4	9.4e-24	272	315	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Gh_D05G0635 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 315 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.68	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	9.4E-14	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.4E-6	4	43	IPR000315	B-box-type zinc finger
CDD	cd00021	2.96E-9	5	48	No hit	No description
PROSITE profile	PS50119	10.552	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	46	91	IPR000315	B-box-type zinc finger
CDD	cd00021	3.92E-8	47	91	No hit	No description
SMART	SM00336	1.8E-8	49	91	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.658	272	314	IPR010402	CCT domain
Pfam	PF06203	1.5E-17	272	314	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MASKLCDSCK SATATVFCRA DSAFLCSNCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT 60 CKADAAALCI TCDRDIHSAN PLASRHERLP VTPFYDSVNS VPAVKPNGVV KFLEERYFSD 120 VDGDADVSRE EAEAASWLLP NPNHKAVDSP DVNSGQYVFS EMDPYLDLDY GHGDPKMDAQ 180 EQNSSGTDGV VPVQSKNVQA PSANDHCFDL DFTGSKSFSY GYNPNFISHS VSSSSLDVGV 240 VPDGSTMTDI SNPYGRGPES THQTVQLSPA DREARVLRYR EKRKNRKFEK TIRYASRKAY 300 AEMRPRIKGR FAKRTDIEVE VDRSNMYGFG VVPSF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.10472	0.0	boll\| ovule\| stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ618332	0.0	JQ618332.1 Gossypium hirsutum constans-like protein 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313911.1	0.0	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q940T9	1e-149	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A1Z2TI20	0.0	A0A1Z2TI20_GOSHI; CONSTANS-like protein
STRING	Gorai.009G065600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2760	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-147	CONSTANS-like 4

Publications ? help Back to Top
Zhang R, et al. Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species. PLoS ONE, 2015. 10(2): p. e0118669 [PMID:25710777]