PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0369
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 504aa    MW: 54159.5 Da    PI: 4.7623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0369genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-11277322555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR++i +++ +L+el+P++      K +Ka+iL + + Y+k Lq
  Gh_D05G0369 277 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASILDEIIGYVKFLQ 322
                  99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-11270326No hitNo description
SuperFamilySSF474591.14E-16270333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.882272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16274332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDDYLDQYFS SSSWSDVNVK ERSYWVHNEP DQPNEVFPSS NFNSIECLAA HNTAPLVHNR  60
GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLNTDV HSSGSSSLVS  120
LNDVPVVGDM IPSLSFNERG RMISNGGESS EFRRSFTGLE TLSPIPQLWH LQPYDSVSSL  180
PTLVGQTIVD DEGNINRFIE IDEILQPENL SASINSKGQQ DMQNSFCSSF PADHPITKTM  240
IGLPSLVQGA SPNLNNGSDR TVKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP  300
NSNKTDKASI LDEIIGYVKF LQLQVKVLSM SRLGAAAAVV PLITDGRAEV SNGLSLAPLA  360
GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS  420
SSSVPASDES KKLGFTNSTL INNTCSSSSS SSSSNSSGSL PGVGIPNINA DGNFMTGMLG  480
SDIMAKGCTG TFKQEELNTL CTAK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153241e-163JX615324.1 Gossypium hirsutum clone NBRI_GE59251 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689769.10.0PREDICTED: uncharacterized protein LOC107907072
RefseqXP_016689770.10.0PREDICTED: uncharacterized protein LOC107907072
TrEMBLA0A1U8JN760.0A0A1U8JN76_GOSHI; uncharacterized protein LOC107907072
STRINGGorai.009G038500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-56LJRHL1-like 3