PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0303
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 521aa    MW: 58267.6 Da    PI: 7.9242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0303genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10347391554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h   Er+RR+++N++f+ Lr+llP+      +K + +++L  + eY+ sL
  Gh_D05G0303 347 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 391
                  6778********************97.....79999**********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-11344395No hitNo description
SuperFamilySSF474599.81E-15345410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13346409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8347391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA  60
LVLFLEYRRL TFPLENNQGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG  120
CKSGEIELGS PNAVNLNMEM EMRTFFPEDF SRQSLVAVSE PTDPNNPSSS SSSLRSLSPD  180
RPDSYLIFTV PNASRPQVPT GSETTPFLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP  240
SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGT  300
PTTTAARASL RAQSMLKRAI LFYRRFKLVR SEQQPRSCAP TVHQLHHMLS ERKRREKLNE  360
SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIMELNR QNQLLEAAQA SATSSDEANG  420
SSNERLTIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN  480
TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERKRRE
2351356RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689874.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0D2UFH10.0A0A0D2UFH1_GOSRA; Uncharacterized protein
STRINGGorai.009G031900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-71bHLH family protein