PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G0292

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 255aa MW: 27758.4 Da PI: 10.5671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G0292	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.9e-13	108	152	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky Gh_D05G0292 108 PWTEQEHRVFLVGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 152 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.532	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.65	101	157	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-17	103	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-18	104	156	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.8E-11	105	151	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-10	105	155	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-11	108	152	IPR001005	SANT/Myb domain
CDD	cd00167	1.20E-8	108	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRKCSHCGN IGHNSRTCTT FRGSSVVGGL RLFGVQLGIS SSSSDSLKKS ISMDCLSSSA 60 SPSSPSPSSS LSSPRISMDE LSDKTTSNIG YLSDGLMAPS HERKKGVPWT EQEHRVFLVG 120 LEKLGKGDWR GISKNFVTTR TPTQVASHAQ KYFLRQSTLN KKKRRSSLFD MVRSSSMVAP 180 HVNTSNSQHH HHLMFDKLQY GCIDSQTKTS NATAESMSSN LVPDLELKLA APRPGLEKNN 240 KSSPTTLLIR SISVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	164	KKKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26286	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269\|PubMed:12172034}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622827	2e-49	JX622827.1 Gossypium hirsutum clone NBRI_GE69725 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689887.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q7XC57	4e-52	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1U8JHV5	0.0	A0A1U8JHV5_GOSHI; transcription factor MYB1R1-like
STRING	Gorai.009G030900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5496	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-53	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]