PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0023
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 232aa    MW: 26247.7 Da    PI: 4.3517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0023genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-145699755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N++++ Lr l+P+      +K++Ka+i + A++YI++Lq
  Gh_D05G0023 56 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 99
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3424998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1852113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-1552103No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1754117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1755104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-125599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MENVSEEYNQ NIWEPNYVFE NEEYSWAMDE LYDNDCSSSP DGATASASLS NSNNILSERN  60
RRKKLNQRLF ALRALVPNIT KMDKASIIKD AIDYIQQLQE QEATLQADIM ELENNNNNNP  120
KNHDLPMLLT SKNTSVFDSP IQLLQLNVTP MGDNTLLVSI TCTKRADTVL KLCQLFESLN  180
LKIITANLTV VSANLFNTLF IRADEKEKEE LKMQIQTAIA AFNGPQTPPI TI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-1553114869Transcription factor MYC2
5gnj_B8e-1553114869Transcription factor MYC2
5gnj_E8e-1553114869Transcription factor MYC2
5gnj_F8e-1553114869Transcription factor MYC2
5gnj_G8e-1553114869Transcription factor MYC2
5gnj_I8e-1553114869Transcription factor MYC2
5gnj_M8e-1553114869Transcription factor MYC2
5gnj_N8e-1553114869Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6150475e-32JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690213.11e-169PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV96e-76BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1U8JNC81e-168A0A1U8JNC8_GOSHI; transcription factor bHLH35-like isoform X2
STRINGGorai.009G002200.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2492134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-67bHLH family protein