PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1971

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 205aa MW: 22241.3 Da PI: 4.7583

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1971	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.6	3.7e-42	61	160	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k l++lpe++reda+ss+vyeA r+rdPvyG++g i++lq+q++ l+a+la+++ Gh_D04G1971 61 PCAACKILRRRCVDKCVLAPYFPPTEPSKFIIAHRVFGASNIIKSLQELPESQREDAVSSMVYEASSRIRDPVYGCAGAIFQLQKQVSDLQAQLAKAQ 158 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D04G1971 159 AE 160 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.614	60	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-42	61	158	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MENNERGSIS PISIPTTFSY SPSSSSSSPL SQFSPSLPSP DSQSSSPPQA AAASPQLVLS 60 PCAACKILRR RCVDKCVLAP YFPPTEPSKF IIAHRVFGAS NIIKSLQELP ESQREDAVSS 120 MVYEASSRIR DPVYGCAGAI FQLQKQVSDL QAQLAKAQAE VVTLQCQQAN VLTLILEMSQ 180 SKEPIDTTCF LDDTCIVSPW EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	60	168	10	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	60	168	10	118	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016679407.1	1e-146	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	8e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1U8IMP7	1e-145	A0A1U8IMP7_GOSHI; LOB domain-containing protein 1-like
TrEMBL	A0A2P5QGR2	1e-145	A0A2P5QGR2_GOSBA; Uncharacterized protein
STRING	Gorai.012G094200.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-68	LOB domain-containing protein 1