PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1901
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 1647aa    MW: 185054 Da    PI: 7.9923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1901genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-1614051450148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
      Gh_D04G1901 1405 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 1450
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011227.6E-39578704IPR025954DBC1/CARP1 catalytically inactive NUDIX hydrolase domain
PfamPF144433.8E-36580698IPR025954DBC1/CARP1 catalytically inactive NUDIX hydrolase domain
PROSITE profilePS5022210.69213161351IPR002048EF-hand domain
SuperFamilySSF474738.24E-813181364IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.101.2E-613191383IPR011992EF-hand domain pair
PROSITE profilePS500904.08913781399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-1013851412IPR009057Homeodomain-like
SuperFamilySSF466897.89E-2013851459IPR009057Homeodomain-like
PROSITE profilePS5129425.89114001454IPR017930Myb domain
SMARTSM007171.2E-1614041452IPR001005SANT/Myb domain
PfamPF002492.7E-1514051450IPR001005SANT/Myb domain
CDDcd001675.78E-1114071450No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2114131451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1647 aa     Download sequence    Send to blast
MYSSRGTNAY GQQPYVGQSG YAQNLGAGYS SSSVGGPDGG AQMSLSSRHS SILGSSQDTE  60
VGGYRALPSV SAHYGVQYSS IYGTSALSAT QQVPAASSKG AGASALEARN AYASALPDSP  120
KYASTDYVSS ASHSYSHKGD QMYAEKIPDY PTVERRQFGE RQGSYLGRDL SSEPTGRYSD  180
SAFFGHQHQP DIYDRLDQAV LLRQEQLLKA QSASHDSSSR QADYLAARSA AGRHSAQDLL  240
SYGGRIDADP RSLSLLSSSS SYGGQTPSIL GAAPRRNVDD MMYPPSSANP GYGVSLPPGR  300
DYGTKGLHVT TLETEYPGST LSRSGLPRID ERKDDRAGYL REFEMREEER RREHLREREK  360
DRERERERER ERERERLRER ERERERLRIL ERREKERERE KERERERKRA LEVTRARTPP  420
RVSRDHRGPS LTKEVRPVKR ESPRREASHR RLSPVKEKRR EYVSKVYTSN LIDVERGYLS  480
IDKRYPRLFV SPEFSKVVIN WPKGNLKLSM HTHVSFEHDF IEDNLVESKE LSSKLLPVEP  540
EKPEQGSTVW NAKMMLMSGL SRSALEELSS EKIPDDRIPH ICNILRFAVL KKDHSFMAIG  600
GPCVSADGSN PTGDEFSLTQ TALSRYAQDV VNLDLQKCQH WNRFLEIHYD RVGKDGLFSH  660
KEVTVLFVPD LSECLPSLDE WRAQWLAHRK AVSERERQLS LKREKSKERK EGSKDKEADT  720
TKQTERGKSG KKILSMSSSD GVVANKKEKD GKCIEGDDSE GKANGGENKV LVKDGSEITV  780
EGGPEKKESG EAATAKTGVV KSVKKKIIKR IVKQKVANKT AAEVNTASKP SNKVEDAGEQ  840
NTKSEIGSQL EESSAGSAGI KTFARKKVTK KEAVGKTDQD EDNDVPLEAK MEVETGCSGD  900
KPKDNSDATA AAVENATVKT TLKKKIIKRV PKRKVPATQA KDEVAEIKND GGEDEKKVVL  960
AGTETSNIGK QTGSEKQGNA ASSSKSESKP EKENKKDEKS TNTESLNDKK KVNTKYTCDV  1020
KGAKLKEGEK PKDEKAEKDS KDESRSNTNK ELKEKRKPDE PSLKHPGLIL QTKWSKDSKL  1080
RPLSLSLDSL LDYTDKDIEE STFELSLFAE VLYEMLQYQM GCRILTFLQK LRVRFITKRN  1140
QRKRQREEKS DKETEKTSPT KRSKSNELPV MKNESTKLDT STATQQEDEM IVTKEETTTD  1200
QVEEPKMANE ETNVDHVEEP KIKDEIEEED PEEDPEEYEE MEDASQPNSS NEKNEEEKAQ  1260
TDAKPEKGSE KEAEKNEAVA STKSEITTKA ASTDAGPEGD MSRKEQKVDP KKKVPAIDKD  1320
LLQAFRFFDR NRVGYVRVED MRLMIHSLGK FLSHRDVKEL VQSALLESNT GRDDHILYDK  1380
LVRLQRCGKS CRLRWINYLR PDIKRGKFSL QEEQTIIQLH ALLGNRWSAI ATHLPKRTDN  1440
EIKNYWNTHL KKRLTKMGID PVTHKPKTDA LGSTTGNPKD AANLSHMAQW ESARLEAEAR  1500
LVRESKLVPS NPPQSNHFTA VAPSPTPATR PQCLDVLKAW QGVVCGLFTF NMDNNNLQSP  1560
TSTLNFMENT TTLPMSSSSS VNGMFNENFG WNSSINPCES GDILKVEYGS DQIPELKERL  1620
DHPMELHEMD CSSEGTWFQE LFGFNGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-161386145440108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377387RERERERERLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.103600.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO133461870.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362830.0AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046031.20.0PREDICTED: cell division cycle and apoptosis regulator protein 1
TrEMBLA0A061EA310.0A0A061EA31_THECC; ATP/GTP-binding family protein, putative isoform 3
STRINGGorai.012G186600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.15e-72myb domain protein 106