PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1696
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 79aa    MW: 9193.39 Da    PI: 5.1146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1696genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00032183955
                 TCHHHHHHHHHHHHHHH CS
          HLH 39 sKaeiLekAveYIksLq 55
                 + a++L  Av+YIk+Lq
  Gh_D04G1696  2 DRATVLGDAVKYIKQLQ 18
                 6799************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-5137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-5128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDRATVLGDA VKYIKQLQEK VKTPEEQARQ KPMEYVACVK KHQLLIDSKG DFSSWDEHFS  60
APFDEPLPEI EARWTWNSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679317.11e-48PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0D2S3Z78e-47A0A0D2S3Z7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IMH03e-47A0A1U8IMH0_GOSHI; transcription factor bHLH25-like
TrEMBLA0A2P5RHT58e-47A0A2P5RHT5_GOSBA; Uncharacterized protein
STRINGGorai.012G161700.11e-47(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-14bHLH family protein