PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 13922.9 Da PI: 8.4605 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.3e-13 | 4 | 97 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkvlt+ d ++ l+lp +++++ ++ ++++ +l+++d g sW++++ + +sg + +GW +Fv+ ++L++gD++v++ d+++ + ++ Gh_D04G1605 4 FFKVLTKIDIERT--LSLPDSCLQALqqSQRSHGGEKLQVKDDVGISWNFYC--TIRSGVvpkLDIVSGWIQFVRVKRLNTGDVIVLYKDDDTVTGPH 97 8999999998877..9******98888755556888****************..7777666667888*********************6665555455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-12 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-13 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-13 | 3 | 104 | No hit | No description |
Pfam | PF02362 | 8.1E-11 | 4 | 92 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0073 | 4 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MASFFKVLTK IDIERTLSLP DSCLQALQQS QRSHGGEKLQ VKDDVGISWN FYCTIRSGVV 60 PKLDIVSGWI QFVRVKRLNT GDVIVLYKDD DTVTGPHYKI EVVKGHGDNY SSSAQMYTKS 120 CYAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458784.1 | 2e-64 | PREDICTED: uncharacterized protein LOC105779536 | ||||
TrEMBL | A0A2P5Q710 | 9e-78 | A0A2P5Q710_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G151200.1 | 4e-75 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18968 | 4 | 8 |