PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27706.8 Da PI: 7.1338 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65 | 1.4e-20 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G ++W++++r ++ gR++k+c++rw + Gh_D04G1578 9 KGPWSPEEDELLRKLVHRHGARNWSLVSRSIP-GRSGKSCRLRWCNQ 54 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd +v+a++++G++ W+tIar ++ gRt++ +k++w++ Gh_D04G1578 63 PFTSEEDGVIVKAHAKYGNK-WATIARLLN-GRTDNAVKNHWNST 105 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.866 | 4 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.59E-31 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-17 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-20 | 9 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-14 | 11 | 53 | No hit | No description |
SMART | SM00717 | 3.6E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.937 | 61 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.6E-14 | 63 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.48E-9 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDRDVDRVKG PWSPEEDELL RKLVHRHGAR NWSLVSRSIP GRSGKSCRLR WCNQLSPEVE 60 HRPFTSEEDG VIVKAHAKYG NKWATIARLL NGRTDNAVKN HWNSTLKRKL SEAEDGDSVQ 120 ESEKRSVKSP RRESPSGSEV SDLGLSVAKS NQHSADVVST ELTLGRSWNE SFEFNNSSSS 180 EKKNEQPLEE KQVAGKNMTT VALALAATAA LTPAAMQEMI RKEVRDYMAE FDCNSENLRD 240 LWGRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-38 | 6 | 110 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012461001.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-64 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0D2V6S9 | 1e-179 | A0A0D2V6S9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G149000.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 5e-64 | myb domain protein r1 |
Publications ? help Back to Top | |||
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