PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30453 Da PI: 8.2116 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ +++ g+ R++k+c++rw++yl Gh_D04G1436 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWLNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l Gh_D04G1436 67 RGNYSKEEEETIIRLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHTHL 112 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.644 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.38E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.32E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.211 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.44E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MVRTPYCDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKYAGLARCG KSCRLRWLNY 60 LRPNIKRGNY SKEEEETIIR LHESLGNRWS AIAAQLPGRT DNEIKNHWHT HLKKRFMDKQ 120 NVRAHFARAQ EKAVEKKEKK LNNHHHLVID VPTSPPLILE SSLSASPQPT SSDQYSTITK 180 DNTVLSSKDS VTYDHNNNNK ASLEGYEASS GNFWNEPFFW DSSNINTSVT LDPASYELPE 240 FPFLDGEISC HFDSYDPLDG FYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457982.1 | 1e-180 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 7e-61 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A2P5QCD3 | 1e-180 | A0A2P5QCD3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G132400.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-60 | myb domain protein 14 |
Publications ? help Back to Top | |||
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