PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1416
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 342aa    MW: 39043.6 Da    PI: 6.9659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1416genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18142191255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr++  +g+WvAeIr p+e   r+r +lg+f+tae+Aa a+++ + kl+g
  Gh_D04G1416 142 LYRGVRQRQ-WGKWVAEIRLPRE---RTRLWLGTFDTAEDAALAYDRKAFKLRG 191
                  59****999.**********976...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-33141201No hitNo description
Gene3DG3DSA:3.30.730.109.7E-32142200IPR001471AP2/ERF domain
SMARTSM003801.5E-36142205IPR001471AP2/ERF domain
PROSITE profilePS5103223.156142199IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22142200IPR016177DNA-binding domain
PfamPF008475.0E-12143191IPR001471AP2/ERF domain
PRINTSPR003675.0E-11143154IPR001471AP2/ERF domain
PRINTSPR003675.0E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADEIEKVKE IAKGKGVDFG VELERQQWKP VFDEASISQR PLKKIRSPQR RHHHLVHSSV  60
SYPSLPSSRL VFPFAFDGSF DPMSRPWQPQ NQQHMISFSP QPQQQQQQQL LQYCSGALNL  120
SPRGGMMGRL GQPVQPIHTS KLYRGVRQRQ WGKWVAEIRL PRERTRLWLG TFDTAEDAAL  180
AYDRKAFKLR GKNARLNFPE LFFKKDKDTS PSSPEPNQNQ NLPKQEHESP KLQSANMESM  240
SQGDNPGSEP TTIDMVQMTA EEGDSGSQAS MWEDMALAEA WFNAFPEEWG PVNPVWDDIN  300
AANNLLLPSN PSFTNQNQQD FSEFDHQKQD SSSTSCPKKP FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20141199160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20141199463ATERF1
3gcc_A4e-20141199463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323107e-69EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679135.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A1U8ILU40.0A0A1U8ILU4_GOSHI; ethylene-responsive transcription factor ERF054
STRINGGorai.012G130600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-55ERF family protein