PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G1304

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 208aa MW: 23117.6 Da PI: 8.3691

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G1304	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.8	1.2e-11	20	207	198	374
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpres 279 ++E la n+++ l ++ + ++++ +e+L + k+l + ++++ e +a n + sF + f l +y a+++s+e++++++ Gh_D04G1304 20 TKEWLAFNCMVGLPHIGK--NKSRKLVNEFLGIAKQLltscgdnarttKRGIITLGEGDACENLKdgtgsSFGAYFNAQLMHYQAIMESMESNMAKHL 115 489999999999999983..33333345666666655322222211115669999999854332233444*********************98887 PP GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGF......kpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpL 367 ++r +E ++g++i+ ++kW+e+ e++ F + +++s +++ak ++++ + + y+v ++ ++l+l W++ +L Gh_D04G1304 116 vQARLAMECLFVGPNICAQAW------------FQKWKEMNETCYFqagttlEGLKVSRGRVMEAKEMVKERG-NSYEVSiggDSGNELTLDWRGITL 200 8**********975544............445555554444311111156889999*******99.44888877788999****** PP GRAS 368 vsvSaWr 374 v vS+Wr Gh_D04G1304 201 VKVSSWR 207 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.0E-9	20	207	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MGIHDLVNEF MAMKKQGGGT KEWLAFNCMV GLPHIGKNKS RKLVNEFLGI AKQLLTSCGD 60 NARTTKRGII TLGEGDACEN LKDGTGSSFG AYFNAQLMHY QAIMESMESN MAKHLVQARL 120 AMECLFVGPN ICAQAWFQKW KEMNETCYFQ AGTTLEGLKV SRGRVMEAKE MVKERGNSYE 180 VSIGGDSGNE LTLDWRGITL VKVSSWRN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458654.1	1e-149	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2P5SFA2	1e-151	A0A2P5SFA2_GOSBA; Uncharacterized protein
STRING	Gorai.012G118000.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21