PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G1208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 643aa MW: 70006.2 Da PI: 7.3493 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 444 | 481 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Gh_D04G1208 444 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 481 554459******************************88 PP | |||||||
2 | BELL | 107.1 | 1.1e-34 | 313 | 381 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kk++L+s+l+eV++ Ykqy++q+q+v++sFe vaglg+a+pY++lAlka+S+hFrcLk+ai++q+ Gh_D04G1208 313 ESRRKKSRLISMLDEVYRSYKQYYQQIQAVVASFEYVAGLGNAAPYANLALKAMSKHFRCLKNAITDQL 381 7899**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.2E-53 | 248 | 379 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-39 | 253 | 378 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 422 | 485 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 425 | 489 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.34E-13 | 425 | 486 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 427 | 491 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 428 | 489 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-18 | 442 | 481 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MAEGFEPYHV PQQSRRDKLR IVAQNHSACV ESTAVTLPGC SGLLPLYDAS LLSSDLLTCA 60 ANASASHDFH HHQANQLSAS ASGKNSSLVC GVKEGVNSMG FVGGVVNGSS SASHHHPYLD 120 GQSSLPVNPS SIHDMNNSPF LYTPQNLQTI RDFDQSYNSG GEVVVYKPEP LSLNHESSAT 180 AQALSLSLSS HNTHQNNLPL ELNLQRYGSA IYSDKVTDSG YVVPSIIRGS ASTSNEVSRG 240 SLPLGPFTGY ASILKGSRFL RPAQMLLEEL CDVGRGLYAE KMTPDSSLMD PSLQNLSGTG 300 IIDDSLSGGD GGESRRKKSR LISMLDEVYR SYKQYYQQIQ AVVASFEYVA GLGNAAPYAN 360 LALKAMSKHF RCLKNAITDQ LQFINKPHGR TSLGKDEGPM FGNTERSLYN LAVHNAGFHE 420 HQPVWRPQRG LPERAVTVLR AWLFEHFLHP YPTDTDKLML AKQTGLSRSQ VSNWFINARV 480 RLWKPMVEEI HMLEQAQKNS QKEARNPNKS SDHLSSANSI APENPSTSFQ RAQDTPSKRT 540 RSEPLSDIPL GSEPHNLTYN SLSSHPHVGM GVSMAGGSNG VSLTLGLHQN NGISLSEPFS 600 FNAAQRFGLG LSSEGYVIGG YEAQNRHFGR DVMGGQLLHD FVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 431 | 488 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 431 | 488 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20929 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016680523.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-121 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1U8IVV4 | 0.0 | A0A1U8IVV4_GOSHI; BEL1-like homeodomain protein 9 | ||||
STRING | Gorai.012G108300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-120 | TALE family protein |