PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D04G1191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 33231.9 Da PI: 6.5771 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.7e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H Gh_D04G1191 56 YSCSFCGREFTSAQALGGHMNVH 78 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.86E-7 | 53 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 54 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.7E-6 | 56 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.362 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MNQARYWMWT NRKPGLSSNN LQPSTKASYD DSWEEQAFAE DTAGSLGGCI WPPRSYSCSF 60 CGREFTSAQA LGGHMNVHRR DRARLKQSPT SQDGILHHDP QNSPNHIQKP FLPVSFQYQP 120 DEVCNFVYNP NPNSNHGTPP SPPSNSKDNC PEPTLVPALS SETAQDHPMK SPKTSTKSWS 180 NYVEDRYYHF SDLWNEVEKC PSILESGCSF KADYVQTDLS VCLNLIVRRG RTPPTTSGSK 240 EEIGYKRKRI DHTPILPFLL KPISIETHHL QAAEVSELSP SSDDDIDLEL RLGPR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-11 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 3e-11 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016680500.1 | 0.0 | PREDICTED: uncharacterized protein LOC107899327 | ||||
TrEMBL | A0A1U8IR06 | 0.0 | A0A1U8IR06_GOSHI; uncharacterized protein LOC107899327 | ||||
STRING | Gorai.012G106300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06070.1 | 7e-27 | C2H2 family protein |