PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1177
Common NameWRKY21
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 298aa    MW: 33703.4 Da    PI: 4.806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1177genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.95e-29114171258
                  --SS-EEEEEEE--TT-SS-EE.EEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprs.YYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++k+s++prs YY+Ct ++C++kk+ve+s+++ ++++itYeg H h
  Gh_D04G1177 114 DDGYKWRKYGQKSIKNSPNPRSlYYKCTNPRCNAKKQVEKSRDEADTLIITYEGLHLH 171
                  8********************99*********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.065108174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-27110171IPR003657WRKY domain
SuperFamilySSF1182904.45E-23111171IPR003657WRKY domain
SMARTSM007745.6E-31113173IPR003657WRKY domain
PfamPF031062.9E-22114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEGGEKHDW VDDDSQEELV RELLDEESPF FVLSQGTIQP KAITSEEEVS KQLVSNVYSG  60
PRIEDIENAL SSVSNWKDQP QQTTRINSML ERNLSKIESK YTLKVRSCGN GMADDGYKWR  120
KYGQKSIKNS PNPRSLYYKC TNPRCNAKKQ VEKSRDEADT LIITYEGLHL HFVDPYFPPL  180
SDQPFQHDNN EPTKKPRKAI SESDESRAFG LPQTMQIQEA TTNNINSAVS LEGCPCPQEV  240
ASEGLLEDVV PWIIRNPFHN NIISSNSTSC SSSQTRSPPV SPSSLSWSPN YNPWPVFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-171121751375WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310770.0KF031077.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680488.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A059Q7S50.0A0A059Q7S5_GOSHI; WRKY transcription factor 21
STRINGGorai.012G104800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-51WRKY DNA-binding protein 49