PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1048
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 252aa    MW: 27667 Da    PI: 7.4075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1048genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014170192123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Gh_D04G1048 170 HECSICGAEFSSGQALGGHMRRH 192
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-10100125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.37E-9100123No hitNo description
PROSITE profilePS501579.182101128IPR007087Zinc finger, C2H2
SMARTSM003550.45101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.37E-9165192No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4166192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-13169193IPR007087Zinc finger, C2H2
SMARTSM003550.01170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEGQQEVVLC KDELQIIKGK RTKRPRPVSS LTLAIASTTT TSTGGESRTS NDDSSITTAV  60
EPPESCWEDE ENMAYCLMLL AQGQTRKPSE PTGKTARMNV HQCKTCNRCF PSFQALGGHR  120
ASHKKPKLHS EENTKRLKFV KEDDDMNTTL SLQITNKAPA LCNGTKSKVH ECSICGAEFS  180
SGQALGGHMR RHRTSTNATT TVGTSTSAET EDLSSNKPTT VLQLDLNLPA PEDDRHNESN  240
FPFTQTINLC YC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.235462e-32boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680709.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1U8IXQ50.0A0A1U8IXQ5_GOSHI; zinc finger protein ZAT5-like
STRINGGorai.009G412900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2498034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-43C2H2 family protein