PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0859
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 316aa    MW: 35050.3 Da    PI: 6.1533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0859genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-17174228256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rq+ vWFqNrRa+ k
  Gh_D04G0859 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTK 228
                  778899***********************************************98 PP
2HD-ZIP_I/II126.11.5e-40174263191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prq++vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Gh_D04G0859 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTKLKQTEVDCEYLKRCCETLAEENKRLQKELQELR-AL 263
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.2E-846140IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.2E-17157224IPR009057Homeodomain-like
PROSITE profilePS5007117.119170230IPR001356Homeobox domain
SuperFamilySSF466894.6E-18171239IPR009057Homeodomain-like
SMARTSM003891.2E-15172234IPR001356Homeobox domain
PfamPF000466.4E-15174228IPR001356Homeobox domain
CDDcd000866.34E-16174231No hitNo description
PROSITE patternPS000270205228IPR017970Homeobox, conserved site
PfamPF021832.0E-10230263IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.8E-24230273IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELALSLGDP SKPFSFLDKT AKLSSKDLGF CMGLGNGFKS QENGDDAFEG KNSTDGDEKR  60
VSSDPPLQLD LLPFSPVPRP QSSSQLRLPW LTDNQTDPWE GLGRGLDVNR LPLVAVADEA  120
EEKAAVSSPN SAVSMDFGIR KGSRRGKKEV EVEAVETERT STRASDDDDN GSTRKKLRLS  180
KEQSAFLEES FKEHSTLNPK QKLALAKQLN LRPRQIEVWF QNRRARTKLK QTEVDCEYLK  240
RCCETLAEEN KRLQKELQEL RALQTSQPFY MQLPATTLTM CPSCERVATA STTNASASTA  300
DAKTGGYPFF SSISNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178TRKKLRL
2222230RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.95570.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681026.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466654e-97HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8ISG80.0A0A1U8ISG8_GOSHI; homeobox-leucine zipper protein HOX11-like
STRINGGorai.012G100100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-73homeobox from Arabidopsis thaliana