PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0842

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

AP2

Protein Properties

Length: 361aa MW: 41204.6 Da PI: 7.248

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0842	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.2	4.7e-09	45	101	2	55
AP2 2 gykGV.rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+G ++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g Gh_D04G0842 45 IYRGYcFRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 101 699997778888*******99998898888888******************98 PP
2	AP2	51.2	3.1e-16	144	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Gh_D04G0842 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195 89**99******99966...3.6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.38E-13	44	111	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.4E-11	45	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.873	45	109	IPR001471	AP2/ERF domain
SMART	SM00380	8.8E-14	45	115	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-5	45	101	IPR001471	AP2/ERF domain
CDD	cd00018	3.10E-24	144	205	No hit	No description
SuperFamily	SSF54171	1.05E-17	144	205	IPR016177	DNA-binding domain
Pfam	PF00847	5.7E-12	144	195	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.334	145	203	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-17	145	204	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-24	145	209	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAKLSQQNHK NTTQNNTSTA SNGVTKVKRT RRSVPRDSPP QRSSIYRGYC FRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GQDTILNFPL STYQKELKEM 120 EDQSREEYIG SLRRKSNGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNQTKPEN NPNPNPNIID TTTTSLVTPN 240 PDQELDLTFF NGNNHNQQLQ ESDVISETLL TQPRPVNATS ALGLLLQSSK FKEMLEMTSA 300 ATDHRQSTPM VSEPVRCGFP EDIQTYFECQ DSSCYGNGDD LIFGELNSFG PSMFQCDQLD 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAKLSQQNHK NTTQNNTSTA SNGVTKVKRT RRSVPRDSPP QRSSIYRGYC FRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GQDTILNFPL STYQKELKEM  120
EDQSREEYIG SLRRKSNGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNQTKPEN NPNPNPNIID TTTTSLVTPN  240
PDQELDLTFF NGNNHNQQLQ ESDVISETLL TQPRPVNATS ALGLLLQSSK FKEMLEMTSA  300
ATDHRQSTPM VSEPVRCGFP EDIQTYFECQ DSSCYGNGDD LIFGELNSFG PSMFQCDQLD  360
A

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016680543.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Swissprot	Q94AN4	1e-111	AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBL	A0A1U8IVX2	0.0	A0A1U8IVX2_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060
STRING	Gorai.012G098200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM553	27	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	3e-94	ARIA-interacting double AP2 domain protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]