PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 22658.7 Da PI: 9.9003 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.6e-33 | 113 | 170 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ Gh_D04G0725 113 EDGYRWRKYGQKAVKNSKFPRSYYRCTHQGCNVKKQVQRLSKDQSIVVTTYEGIHTHP 170 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-35 | 97 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-30 | 104 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.459 | 107 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-40 | 112 | 171 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 113 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MENKYQMFFP ISSPASSAAY DPLTTNIMAP TSPHVFNNFH GNSSNGLMDL KTDQKFVKKA 60 AEVKEPVDQN GSFVGSEADY HLKSSAATDK KKEKMIRKPR YAFQTRSEVD ILEDGYRWRK 120 YGQKAVKNSK FPRSYYRCTH QGCNVKKQVQ RLSKDQSIVV TTYEGIHTHP IHNPTDNFEH 180 ILSQMHVYTP LFKPIHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 102 | 171 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 102 | 171 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23261 | 2e-47 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669846 | 0.0 | KF669846.1 Gossypium hirsutum WRKY transcription factor 99 (WRKY99) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016679426.1 | 1e-149 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | A0A1U8IMT4 | 1e-147 | A0A1U8IMT4_GOSHI; probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2P5S2H3 | 1e-147 | A0A2P5S2H3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G085100.1 | 1e-147 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-53 | WRKY DNA-binding protein 75 |