PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0665 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26050.2 Da PI: 6.4038 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.6e-19 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + Gh_D04G0665 9 KGSWSPQEDANLIKLVEQHGPRNWSMISSSIP-GRSGKSCRLRWCNQ 54 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++a++ +G++ W+tIar ++ gRt++ +k++w++ Gh_D04G0665 63 PFTAAEDAVIIQAHAVHGNK-WATIARLLP-GRTDNAIKNHWNST 105 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.307 | 4 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-30 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-16 | 8 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-18 | 9 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.47E-15 | 11 | 53 | No hit | No description |
SMART | SM00717 | 9.7E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.625 | 60 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-13 | 63 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.30E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MINGGDRVKG SWSPQEDANL IKLVEQHGPR NWSMISSSIP GRSGKSCRLR WCNQLSPAVQ 60 HRPFTAAEDA VIIQAHAVHG NKWATIARLL PGRTDNAIKN HWNSTLRRKR ETELSSGSSE 120 SNSGDKRPSQ DASESESGNK KQCLGLVLHE QEQEQEHENV GMLEPKTLLT LSPPGENMEE 180 EAVVVVVKSE ESGEEKQRAV VDETACLLSI IQRMIKEEVR SYIDKIIADQ NPLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-39 | 8 | 109 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614688 | 0.0 | JX614688.1 Gossypium hirsutum clone NBRI_GE58266 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746411.1 | 1e-172 | PREDICTED: myb-related protein B-like | ||||
Swissprot | O23160 | 9e-54 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A1U8P5B2 | 1e-171 | A0A1U8P5B2_GOSHI; myb-related protein B-like | ||||
STRING | Gorai.012G078200.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 1e-55 | myb domain protein 70 |
Publications ? help Back to Top | |||
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