PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0664
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 241aa    MW: 27197.4 Da    PI: 4.947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0664genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-134490354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+++E+rRRdriN  ++ Lrel+P +      K++Ka+ L+ Ave +k+L
  Gh_D04G0664 44 TSHSQAEKRRRDRINAQISALRELIPMS-----HKMDKAALLKSAVEQVKDL 90
                 68*************************8.....6*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7614190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-144297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-154493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-114490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.82E-114493No hitNo description
SMARTSM003539.3E-124796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENYYQSSSW TDFSDKVSND SSFIVPWTIP VEEIAEDTAT TVYTSHSQAE KRRRDRINAQ  60
ISALRELIPM SHKMDKAALL KSAVEQVKDL KRKAAEISKA FNIPTEMDEV DWDRPQDINP  120
NGSRQGNDSK GKIFISASVC CDDRPEVFTE LIKILKGIDE EEEGSEGVSP TTLKQSLDVV  180
LSRIASSSDV SDCRIQSKRQ SFTLEYLIQT IDTRSYPRKD SSFSKNIIGE RSLMNRGTVT  240
N
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164452e-96JX616445.1 Gossypium hirsutum clone NBRI_GE61128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614715.11e-123PREDICTED: transcription factor bHLH51-like
TrEMBLA0A0B0MQR71e-126A0A0B0MQR7_GOSAR; Transcription factor bHLH51-like protein
STRINGGorai.012G078100.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-33bHLH family protein