PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0470
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 554aa    MW: 60376.8 Da    PI: 6.1526
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0470genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-30234293159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Gh_D04G0470 234 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAsGCPVRKQVQRCAEDMSILITTYEGNHNHP 293
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-32219295IPR003657WRKY domain
SuperFamilySSF1182904.71E-27227295IPR003657WRKY domain
PROSITE profilePS5081129.367229295IPR003657WRKY domain
SMARTSM007743.0E-36234294IPR003657WRKY domain
PfamPF031061.8E-26235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MEVLLMKMPT TDADIAQAIA CHQEDCSPEA KKTENRRKLH ENADLNSSSP SHEDLVDSKE  60
EDELESAKAE MGEVMEENER LKKMLEKIQE NYKSLQLSFF EILQQGAVKK SKCSSISSDH  120
NDEPVVLEPE LVSLSLGRTT PMESVKDEKT TSSIKSKDDP EIKAGLTLGL DSKFQLSSPQ  180
KSSEDQVKED DGAAETWPPN KIQKTTSRNG DEDQQNHVKR ARVSVRARCD APTMNDGCQW  240
RKYGQKISKG NPCPRAYYRC TVASGCPVRK QVQRCAEDMS ILITTYEGNH NHPLPVSATA  300
MASTTSAAAS MMLSGSSTSQ PGLNGLNFSH HDNSTTRQFY LSNSTSSSLS PTITLDVTSS  360
PSHSPLSSSN YFNSFPTSFP RFPRSLNFSS SESNILPAVW GNGYPGYGAV PYYQTQPGNS  420
ILGNESQNQI YQSLPGNNQQ GGASQQSLTE TLTKVITSDP SFRSVIAAAI SSVVCNSAKS  480
EDQTDQKAQH FGQKLMQAIV SQNEKGQSSC SSSYFNGLAS SSSQTRSSLL QSSLPFSILN  540
SAFKPASDDK GLKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20221295174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.33030.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738613140.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750157.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
SwissprotQ9LXG81e-118WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A1U8PG190.0A0A1U8PG19_GOSHI; probable WRKY transcription factor 72 isoform X1
STRINGGorai.012G056800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-93WRKY DNA-binding protein 72