PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0457
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24025.7 Da    PI: 10.0488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0457genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-173991456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + +++ eq+++Le+ Fe+ +++  +++ +LAk lgL+ rq+ +WFqNrR ++k
  Gh_D04G0457 39 KKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWK 91
                 4557889*********************************************9 PP
2HD-ZIP_I/II123.69.2e-4037127191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk+rl+ eqvk+LE+sFe+ +kLep+rK +la++Lgl+prq+a+WFqnrR R+ktkqlEkdy++Lk++++alk++ ++L++++++L +el
  Gh_D04G0457  37 EKKKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWKTKQLEKDYDVLKKQCEALKADADALQAQNNKLSAEL 127
                  69*************************************************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-183095IPR009057Homeodomain-like
PROSITE profilePS5007116.4553393IPR001356Homeobox domain
SMARTSM003893.8E-163697IPR001356Homeobox domain
CDDcd000863.01E-143894No hitNo description
PfamPF000468.6E-153991IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1840101IPR009057Homeodomain-like
PRINTSPR000312.3E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000312.3E-57389IPR000047Helix-turn-helix motif
PfamPF021836.0E-1493133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKIVVMIISF PLLALPNSSL VLTKFLWRMN DGSHVGEKKK RLKLEQVKAL EKSFESGNKL  60
EPQRKLQLAK ALGLKPRQIA IWFQNRRVRW KTKQLEKDYD VLKKQCEALK ADADALQAQN  120
NKLSAELLSL KTKDTNEISI KDEVNEGSWS SKNLFSTSST RPTSMVQLLQ GSTRSNLPCT  180
KPDQVVQEEG FCHLLNEVDE QQGFWPWGEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593RRVRWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666438.11e-152PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT05e-57ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1U8HR571e-150A0A1U8HR57_GOSHI; homeobox-leucine zipper protein HAT7-like
STRINGGorai.012G055400.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2842233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.13e-53homeobox protein 20