PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0454
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 91aa    MW: 10281.7 Da    PI: 8.5387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0454genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247e-0818581554
                 HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +i + +++Lr+llP+ + + ++k  s a +L++++ YIk L
  Gh_D04G0454 18 QITQLLSTLRQLLPEiPHSHSHKASSAAKVLKQTCTYIKTL 58
                 79999**********886555555***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.623358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00911364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-51858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-71874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRWRESS RTNISEEQIT QLLSTLRQLL PEIPHSHSHK ASSAAKVLKQ TCTYIKTLHR  60
EVDDLSDRLS QLLATIDADS AEAAIIRSLL I
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667755.14e-58PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX13e-29PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8HNY81e-56A0A1U8HNY8_GOSHI; transcription factor PRE6-like
STRINGGorai.012G055200.16e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2842333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-29bHLH family protein