PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0444
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 326aa    MW: 35397 Da    PI: 8.3297
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0444genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.87.4e-3561116458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  ++YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Gh_D04G0444  61 ITYKECLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPD 116
                  79******************************9********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1941114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-3262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3363114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.52E-20190260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-30193261IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-27199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDIALASTAP KSPEAEPEPE PVSETPTRIQ PTKPVSFTNG VLKRHKPHHH HHHYQAPPIV  60
ITYKECLKNH AASLGGHALD GCGEFMPSPT ATPTDPTSLK CAACGCHRNF HRREPDDPPP  120
TTATPTIEYQ PHHRHHPPPP ATAGQPNRSP NSASPPPISS SYYPSAPHML LALSGGLTSS  180
HLPAGGLTPN TANLGSNSKK RFRTKFTQYQ KDKMLEFAEK IGWKIQKRDE EDIQEFCREV  240
GVDRGVLKVW MHNNKNTFGK KDQANGGSST RDGNGNGNGN GNGNGSVRFN HEEHNNSNNN  300
GQNLNHHFET DSVAHVGTNG CSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221982571675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28810.0boll| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276781e-137HQ527678.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GDSA6 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459733.11e-168PREDICTED: zinc-finger homeodomain protein 9-like isoform X4
SwissprotQ9LHF02e-78ZHD9_ARATH; Zinc-finger homeodomain protein 9
SwissprotQ9LXG05e-79ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2P5SJQ61e-167A0A2P5SJQ6_GOSBA; Uncharacterized protein
STRINGGorai.012G054300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-64homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]