PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0418
Common NameWRKY18
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 516aa    MW: 56439.9 Da    PI: 8.2761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0418genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32227284260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa d++++ei+Y+g Hnhek
  Gh_D04G0418 227 EDGYNWRKYGQKPIKGCEYPRSYYKCTYLNCPVKKKVERSA-DGQITEIIYKGAHNHEK 284
                  8****************************************.***************85 PP
2WRKY107.95e-34400458159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+vers++dpk+v++tYeg+Hnh+
  Gh_D04G0418 400 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERSSTDPKAVITTYEGKHNHD 458
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.594221285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28223286IPR003657WRKY domain
SuperFamilySSF1182901.44E-25225285IPR003657WRKY domain
SMARTSM007741.2E-36226284IPR003657WRKY domain
PfamPF031066.0E-25227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37385460IPR003657WRKY domain
SuperFamilySSF1182908.11E-30392460IPR003657WRKY domain
PROSITE profilePS5081139.249395460IPR003657WRKY domain
SMARTSM007744.0E-40400459IPR003657WRKY domain
PfamPF031061.7E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAEKRTRSKL SAPTRPSITL PPKPAMDGLF SSGLGLSPGP MTLLSSFFSD LDSTENRSFS  60
QLLASAMTSP GARLPHASMD GSFMELGFKD GGEKSPGFKH NRPLNFDSPL FTAPTGLTPS  120
GLLNSPSFFC LSPQSPFGIS HRQALAQVTA QAALAQSQVH PQTEYQALTV SAPSESLIRH  180
PSFTPEETSQ LMPPLASEPQ SSAIEYSEAS QSDRKNQLPI AVDKPAEDGY NWRKYGQKPI  240
KGCEYPRSYY KCTYLNCPVK KKVERSADGQ ITEIIYKGAH NHEKPQPNKQ AKGGSDGNAN  300
SQANPEFGYQ VAALNSNKLS ETMSSHSILG KTSESTQAAE LPGSSDSEEG CDEESREERD  360
DDEPNLKRRN TAPEAAVVLS HKTVTEPKII VQTRSEVDLL DDGYRWRKYG QKVVKGNPHP  420
RSYYKCTSAG CNVRKHVERS STDPKAVITT YEGKHNHDVP AARNSSHNMV NNSLSQTKPH  480
KVVAENQNHS LLKAMDFGNN GQGPAVLRLK EEQIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40227461878Probable WRKY transcription factor 4
2lex_A3e-40227461878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.218640.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310760.0KF031076.1 Gossypium hirsutum WRKY transcription factor 18 (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459729.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-142WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A059Q7R00.0A0A059Q7R0_GOSHI; WRKY transcription factor 18
STRINGGorai.012G051500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-110WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]