PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 272aa MW: 30007.5 Da PI: 7.2866 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 71.2 | 1.3e-22 | 15 | 61 | 2 | 48 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++s++d++ +Fslp+ dAA++Lgvc++vLK+iCR++G++RWPhRk Gh_D04G0318 15 AQSLSFDDIADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWPHRK 61 5799******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.3 | 1 | 85 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-19 | 18 | 62 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSLKHHHNSN SAAAAQSLSF DDIADFFSLP LDDAASTLGV CTSVLKKICR ENGLDRWPHR 60 KFLAGKSVEE IKRHAARERR REIAELSKAH RQSSQPQPQN NEQPKLQGGS ALPNLQQQGI 120 RNIQTAQALN FSHQSLMTGA AMSDEFKFGF PSDGLSVTTN KWWGSSKSDC NEVSDADGAE 180 TEGEDKHQTI EEPDYMANDK PDQNGKIEDG ISPQGSSLLA AIRKRSMEEG REALELGVCK 240 GRGMKRLGSR KASLLLRIFK SSLPDVWIHD PS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11276 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016751352.1 | 0.0 | PREDICTED: uncharacterized protein LOC107959733 | ||||
TrEMBL | A0A1U8PJI3 | 0.0 | A0A1U8PJI3_GOSHI; uncharacterized protein LOC107959733 | ||||
TrEMBL | A0A2P5S2V8 | 0.0 | A0A2P5S2V8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G040100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11651 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 6e-10 | NIN like protein 7 |