PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 731aa MW: 79615.5 Da PI: 6.2996 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104 | 8.2e-33 | 246 | 303 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers d++++ei+Y+g Hnh+k Gh_D04G0203 246 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQAKKKVERSL-DGQITEIIYKGAHNHSK 303 7****************************************.***************85 PP | |||||||
2 | WRKY | 102.1 | 3.3e-32 | 464 | 522 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe Gh_D04G0203 464 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKYVLTTYDGKHNHE 522 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-29 | 233 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.043 | 240 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-26 | 241 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-37 | 245 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 246 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-35 | 449 | 524 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-28 | 457 | 524 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37 | 459 | 524 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-37 | 464 | 523 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 465 | 522 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MDNNVILFTD PQESVTADDD DQGEGRGPSI AERRAATCGF KAEMICTPTF KSPLGPTSPR 60 LPYFTISPGI SPTALLDSPI MLPNAQASPT TGTFHNHDDT VVNHIKGDRD RSLVSSLTCK 120 TQNMDSRPSL SSVEDQVSSA FNLVQNAEVD PQPLCHLDRP LDLKIPSSLS KEATSRSFAA 180 DSVADVGILN DIVNDNANLG FHPSELGSGQ TLRQKESLNG QDVCTRLLEG DQKVTNTAMG 240 TTRTSEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQAKK KVERSLDGQI TEIIYKGAHN 300 HSKPQPCRRP SLGSTLSSEE MSESVEGNGT SVKVEGGLIW RNSQAGSKEI KLGSDWRADG 360 LERTSSSIVT DLSDPLSTAQ GKSVGMFESA ETPEFSSTLA SHDDENDDRA TQGSISLCGD 420 AANDDESESK RRKTESCMTE MNVASSASRE PRVVVQIESD VDILDDGYRW RKYGQKVVKG 480 NPNPRSYYKC TSPGCPVRKH VERASHNLKY VLTTYDGKHN HEVPAARNSS HVNSSGCNLP 540 PTMPNTQAAL SLSRNTHPLK PETPIQDFAP PFDRKPEFKS EYVRPGFLGD FSNEMKLGEA 600 ALASVYQMKF PSIQKAIPYG SFGLNPNCIA SHSSSSIAST IPNFPISLPL NLPTPANLSL 660 AGFDMNNVGK STGPIHSFLP GQQLKENGVR FHGIKQELKD DNLYDPSLPI VDHASVSSSS 720 VYQYAIGKFP S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-33 | 246 | 525 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-33 | 246 | 525 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY331171 | 0.0 | AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016750959.1 | 0.0 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
Refseq | XP_016750960.1 | 0.0 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
TrEMBL | A0A1U8PIG4 | 0.0 | A0A1U8PIG4_GOSHI; WRKY transcription factor SUSIBA2-like | ||||
STRING | Gorai.012G028200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17370 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 5e-92 | WRKY DNA-binding protein 34 |