PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0157
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 557aa    MW: 61459.6 Da    PI: 5.0434
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0157genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-173986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
      Gh_D04G0157 39 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding47.54e-1592135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T eE+ l+++++ ++G++ W++ a+ ++ gRt++++k++w++
      Gh_D04G0157  92 KGAFTREEEHLIIELHSKMGNK-WARMAANLP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2783486IPR017930Myb domain
SuperFamilySSF466892.06E-2938133IPR009057Homeodomain-like
SMARTSM007172.4E-153888IPR001005SANT/Myb domain
PfamPF002492.4E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-234093IPR009057Homeodomain-like
CDDcd001678.95E-124186No hitNo description
PROSITE profilePS5129425.33487141IPR017930Myb domain
SMARTSM007171.5E-1491139IPR001005SANT/Myb domain
PfamPF002493.3E-1492135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2494140IPR009057Homeodomain-like
CDDcd001673.18E-1094135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSHTKNERED RMLSKNQKEL PLIDDGNCGD ADGGALLKKG PWTSAEDAIL IDYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTREEE HLIIELHSKM GNKWARMAAN  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALKES HRTSAVSGGD KGTHDILQNN  180
TYEIPDVIFD SLKANQNVLP YVPELPDISA SSMMMKVLGS SQYSSFMPPA IHRQKRLRES  240
AAFSPGYTAA VKNDCPLFEQ FEDNMFNKAA QPFGQSFPFE PDPLTKKSKS FSAFQGSHAL  300
SHGNFSASEP TLEAVKLELP SLQYPETELE NWGTFSCSSS LLESVDAFIQ SPQTTSAVVL  360
DSLSPRNSGL LDALLHEAKT LSSAKNHASD KTSNSSTPCD IAERSNFNIC ETEWENCGET  420
LSPMCHSATS FFSESISASG SGSSLDEQPP AETFTEPHTK SESSDHVLTP EVEKEAPIWS  480
DGRCPDILLA SNWLEQGSGY DKDETIMIDA IATLLSDDLS SEYTSMLAGT SVSSQVWEPS  540
CCAWNNMPAV CQMSELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31371405107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591468e-42AJ459146.1 Gossypium hirsutum partial myb118 gene, clone pGhMYB118.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714191.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_016714192.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_016714193.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A385CIH90.0A0A385CIH9_GOSHI; GAMYB-DB2
STRINGGorai.012G022000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-128myb domain protein 33