PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23376.7 Da PI: 9.0026 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ae+++++ Gh_D04G0127 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQAEVHAVR 139 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D04G0127 140 AE 141 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.624 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-42 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MARERFDEIG KKIKREGGVS CHQQMGRRHI LSPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQHQVQS LQAEVHAVRA ELLKYKYREA NFIPSSLVAL LSSGAVSVAA PPPPPQPPPP 180 PLPTTSTSTS SMYTQLTTAA DYTTISNENV SYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-47 | 34 | 157 | 3 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-47 | 34 | 157 | 3 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ525765 | 1e-146 | HQ525765.1 Gossypium herbaceum clone NBRI_D_2250-1 simple sequence repeat marker, mRNA sequence. | |||
GenBank | HQ527996 | 1e-146 | HQ527996.1 Gossypium herbaceum clone NBRI_D_2250-2 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016724389.1 | 1e-157 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 6e-82 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1U8MFQ4 | 1e-155 | A0A1U8MFQ4_GOSHI; LOB domain-containing protein 15-like | ||||
STRING | Gorai.012G015900.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-83 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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