PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D04G0094

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

AP2

Protein Properties

Length: 585aa MW: 64677.8 Da PI: 7.2234

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D04G0094	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.4	1.1e-10	262	322	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g k + + ++ +e+Aaka++ a++k++g Gh_D04G0094 262 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtrKGrQGERSSGYDKEEKAAKAYDLAALKYWG 322 78*****************655564467622544445569999************98 PP
2	AP2	48	3e-15	365	416	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Gh_D04G0094 365 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416 78**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.2E-7	262	322	IPR001471	AP2/ERF domain
CDD	cd00018	7.57E-15	262	332	No hit	No description
SuperFamily	SSF54171	3.99E-11	262	332	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.079	263	330	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-17	263	336	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.3E-9	263	331	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-6	264	275	IPR001471	AP2/ERF domain
CDD	cd00018	4.35E-24	365	426	No hit	No description
SuperFamily	SSF54171	9.15E-18	365	426	IPR016177	DNA-binding domain
Pfam	PF00847	6.0E-10	365	416	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.006	366	424	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-34	366	430	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-18	366	424	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-6	406	426	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MSNWLGFSLT PDLRIDESFG REDHGGFPSV MPLRSDGSLC VVDPFRRFST AADEDWRYEN 60 GIGAATANEQ GPKLEDFLGC YSNSPSQETK AYCGTHENQN TVPSPTRINV NVAPNYSSSG 120 DAEAAENFTN PSSFIQTYRN YNENPQTLMA GGHSLQQCDP NPNHNQRSGV YHVPFESATS 180 VSGFKSWLRQ TPFPGGKASG NETNNNFNFQ ALSLTMSPTS RNGFPATAPL EVVDNRKRPV 240 GRTLTRESVP RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGERS 300 SGYDKEEKAA KAYDLAALKY WGPTTHINFA LSTYEKELEE MKNMTRQEFV AHLRRKSSGF 360 SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV 420 TNFDISRYDV KRICSSSTLI GGELAKRSPK DTASIAPEDY NSCASSASPQ PLLAIPSGEA 480 SDELADMVWT ANSDEQQHQN TNTNNDASLA NSSSRNSSKP QSPKGSIGLA SDQFGIGGDY 540 SHQGYFSLQG SKYEDGNSET DNSNENRLGN LGLVHKIPMF ALWNE

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MSNWLGFSLT PDLRIDESFG REDHGGFPSV MPLRSDGSLC VVDPFRRFST AADEDWRYEN  60
GIGAATANEQ GPKLEDFLGC YSNSPSQETK AYCGTHENQN TVPSPTRINV NVAPNYSSSG  120
DAEAAENFTN PSSFIQTYRN YNENPQTLMA GGHSLQQCDP NPNHNQRSGV YHVPFESATS  180
VSGFKSWLRQ TPFPGGKASG NETNNNFNFQ ALSLTMSPTS RNGFPATAPL EVVDNRKRPV  240
GRTLTRESVP RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQGERS  300
SGYDKEEKAA KAYDLAALKY WGPTTHINFA LSTYEKELEE MKNMTRQEFV AHLRRKSSGF  360
SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV  420
TNFDISRYDV KRICSSSTLI GGELAKRSPK DTASIAPEDY NSCASSASPQ PLLAIPSGEA  480
SDELADMVWT ANSDEQQHQN TNTNNDASLA NSSSRNSSKP QSPKGSIGLA SDQFGIGGDY  540
SHQGYFSLQG SKYEDGNSET DNSNENRLGN LGLVHKIPMF ALWNE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269\|PubMed:15988559}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718961.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	1e-137	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	A0A1U8LWJ5	0.0	A0A1U8LWJ5_GOSHI; AP2-like ethylene-responsive transcription factor AIL1
STRING	Gorai.012G011800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11747	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-120	AP2 family protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]