PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0067
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1102aa    MW: 122179 Da    PI: 6.6269
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0067genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22137238199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       ++k+++  +l  +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  Gh_D04G0067 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMQKPAQ--ELEARDLHENVWKFRHIYRGKPQRHLLTTGWSLFVSGKRLFAGDSVLFI--RNETQQ 230
                  99*****************************95444444..8************************************************..568888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Gh_D04G0067 231 LLLGIRRA 238
                  9****997 PP
2Auxin_resp1171.6e-38263346183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+W +L+
  Gh_D04G0067 263 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWHNLQ 346
                  79********************************9879*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-41128266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-40129252IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-18136228No hitNo description
PfamPF023627.0E-21137238IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843137239IPR003340B3 DNA binding domain
SMARTSM010197.6E-22137239IPR003340B3 DNA binding domain
PfamPF065075.4E-34263346IPR010525Auxin response factor
PfamPF023091.2E-69881075IPR033389AUX/IAA domain
PROSITE profilePS5174527.029901074IPR000270PB1 domain
SuperFamilySSF542777.46E-710031068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
MNVVAAGVES TSNPAAPGSA EGEAPERRHI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKRD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSSFDKEAL  120
LRSDLSLKSN KPQLEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QKPAQELEAR  180
DLHENVWKFR HIYRGKPQRH LLTTGWSLFV SGKRLFAGDS VLFIRNETQQ LLLGIRRANR  240
QPANLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASLSEFVIPL AKYYKAVYNH  300
QISPGMRFRM MFETEESGTR RYMGTITGIS DIDPVRWKNS QWHNLQVGWD ESTAEERRNR  360
VSIWEIEPVT APFFICPSPL FRSKRPRQPG MLADEYSDLD NLFKRPMPWL GDDICLKDSD  420
AHPGLSLVQW MNMQQNPLLA NSMQPNFMQS LAGSTMQNFD GADLSHQMGL SAPQMPQPNN  480
LQFNAHRLPQ KVQQLDQVPK LPSTMNSLGS IIQPQQLNDM TQQSRQNLVA QPLPSSQVLQ  540
PQALVQSNNI LHQQQTSNPT HQLPLSLPQN LQQHLVGPNH LQNLMHSQLP DPLNQHLQVP  600
DNQVQFQLMQ KLQQQQQLLL AQQSALQQPG QLAQPQDQQR QLLDASQSFS SSVTASQVLE  660
MPQNIPTLLP QSNVAPQQMP KNNSQANVWF SQPPLQSKVQ QQQTGMLPEV PGLVGPFQTT  720
ATNQFSTAVS SVMMSAAVAA PSVITDDNPS CSTSPSTNCP SVLQPMIDSR VHRSTGLGDD  780
ISQSTATVLN PNALETMSTK ANMVKEQQQK SVKPLLNISK SQNQGSFAPQ NCINGATALA  840
DCLDTSSSTT SVCLSQSDVH LHQNTPSYNP QTMLLRDTSQ DREVQAYPRN SVSYGNNMDS  900
QIEMSMNSDT LSAKGMMGLG KDFSYHLSSG GVLASYENPK DTQQELSSSM VSQSYRVPDM  960
AFNSIDPTIN HSSFINRSGW TPPSQFQRLR TYTKVYKRGA VGRSIDITRY SGYDELKQDL  1020
ARRFGIEGQL EDRGRVGWKL VYVDHENDVL LVGDDPWEEF INCVRCIKIL SPQEVQQMSV  1080
DGEFGNSVLP NQACSSSGNG NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1593036751388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34200.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719011.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1U8LWP50.0A0A1U8LWP5_GOSHI; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19