PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 674aa MW: 74961.4 Da PI: 6.7905 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.4 | 1.4e-23 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + +++ Gh_D04G0030 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIHAKDVHGNVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAENGD 213 89****************************986545445..8************************************************..448888 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+++r Gh_D04G0030 214 LCVGIRR 220 9****98 PP | |||||||
2 | Auxin_resp | 109.6 | 3.3e-36 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++++FevvY+Prast+eF+vk+++v++a+++++ +GmRfkmafetedss++++ +Gt++ + +dp++WpnS+Wr+L+ Gh_D04G0030 276 AVTRAANGQPFEVVYYPRASTPEFCVKASSVRTATQIHWYPGMRFKMAFETEDSSRISWfMGTISIAQVVDPIHWPNSPWRLLQ 359 67899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-38 | 115 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-30 | 118 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.30E-23 | 118 | 220 | No hit | No description |
PROSITE profile | PS50863 | 12.689 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-21 | 120 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-22 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-31 | 276 | 359 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 13.632 | 588 | 666 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MITVMDCRKE VVKTPEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHAE HANRNVDFGS 60 LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPFRENDFG YEDGFDGNIG MENLEKPPSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNVW KFRHIYRGTP 180 RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDLCVGIRR VKRGIGSGHE YPSSWNLGDG 240 SSGYSPLLRE GESKSMRNDS NEDLRGRIRP ENVIEAVTRA ANGQPFEVVY YPRASTPEFC 300 VKASSVRTAT QIHWYPGMRF KMAFETEDSS RISWFMGTIS IAQVVDPIHW PNSPWRLLQV 360 AWDEPDLLHD VKRVSPWLVE LVTNIPAIHL NPFSPPRKRM RLPQHPDFSL LGQIPMPSFS 420 DSTFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDLRSSK LQSGLFPHGF NQLDHTIPPM 480 GHSSDYGNNR NISSSPTMGN LTQSLKESNE IKTPHILLFG QLIFCEQQVS QSCSDTIGNS 540 SSNGNTEKTV ISSDASGSAL HQNARENSSD EGSPWYKELP KTNMGLETGH CQVFTESENV 600 GRTLDLSVLR SYEELHGKLA NMFGVESSDM LSNVFYHDAA ASVKHTGDEP FSEFLKTARR 660 LTVLTDSGSD NMGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-77 | 1 | 380 | 33 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23713 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684116.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1U8J191 | 0.0 | A0A1U8J191_GOSHI; Auxin response factor | ||||
STRING | Gorai.012G004800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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