PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G0030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 674aa    MW: 74961.4 Da    PI: 6.7905
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G0030genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23120220198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +++ 
  Gh_D04G0030 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIHAKDVHGNVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RAENGD 213
                  89****************************986545445..8************************************************..448888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+++r
  Gh_D04G0030 214 LCVGIRR 220
                  9****98 PP

2Auxin_resp109.63.3e-36276359183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+++a+++++FevvY+Prast+eF+vk+++v++a+++++ +GmRfkmafetedss++++ +Gt++  + +dp++WpnS+Wr+L+
  Gh_D04G0030 276 AVTRAANGQPFEVVYYPRASTPEFCVKASSVRTATQIHWYPGMRFKMAFETEDSSRISWfMGTISIAQVVDPIHWPNSPWRLLQ 359
                  67899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-38115224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-30118234IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-23118220No hitNo description
PROSITE profilePS5086312.689120222IPR003340B3 DNA binding domain
PfamPF023621.0E-21120220IPR003340B3 DNA binding domain
SMARTSM010197.1E-22120222IPR003340B3 DNA binding domain
PfamPF065072.7E-31276359IPR010525Auxin response factor
PROSITE profilePS5174513.632588666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MITVMDCRKE VVKTPEKCLD PQLWHACAGN MVQMPAVNSK VFYFPQGHAE HANRNVDFGS  60
LLIPSLILCR ISAIKFMADP ETDEVYAKIM LVPFRENDFG YEDGFDGNIG MENLEKPPSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI HAKDVHGNVW KFRHIYRGTP  180
RRHLLTTGWS NFVNHKKLVA GDSIVFLRAE NGDLCVGIRR VKRGIGSGHE YPSSWNLGDG  240
SSGYSPLLRE GESKSMRNDS NEDLRGRIRP ENVIEAVTRA ANGQPFEVVY YPRASTPEFC  300
VKASSVRTAT QIHWYPGMRF KMAFETEDSS RISWFMGTIS IAQVVDPIHW PNSPWRLLQV  360
AWDEPDLLHD VKRVSPWLVE LVTNIPAIHL NPFSPPRKRM RLPQHPDFSL LGQIPMPSFS  420
DSTFRSSSPA CCITNNIPGG IQGARHAPFG LSSSDLRSSK LQSGLFPHGF NQLDHTIPPM  480
GHSSDYGNNR NISSSPTMGN LTQSLKESNE IKTPHILLFG QLIFCEQQVS QSCSDTIGNS  540
SSNGNTEKTV ISSDASGSAL HQNARENSSD EGSPWYKELP KTNMGLETGH CQVFTESENV  600
GRTLDLSVLR SYEELHGKLA NMFGVESSDM LSNVFYHDAA ASVKHTGDEP FSEFLKTARR  660
LTVLTDSGSD NMGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-77138033388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.237130.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684116.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8J1910.0A0A1U8J191_GOSHI; Auxin response factor
STRINGGorai.012G004800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]