PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1798

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 251aa MW: 27915.2 Da PI: 8.4594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1798	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s Gh_D03G1798 38 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPS 98 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	25	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDTAAQWPQE IVVKPIEEIV TNTCPKPASL ERRTRPQKEQ ALNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRPSSS SSSPSLSSSS KNPKIHQPQD 120 LNLAFKTTTQ GYTCGNVPEL VQIPNSLDNN KNQIPNSFSS FIPMPVPDPN TVYTSGLIPM 180 QDFKPILNFS LDGLGSGHYG SLQEVQETTT GRLLFPFEDL KQVPNTTDTD QNKEQGDSTG 240 YWTGMLGGGS W

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741142.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	2e-60	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1U8NQ81	0.0	A0A1U8NQ81_GOSHI; dof zinc finger protein DOF4.6-like
STRING	Gorai.003G076400.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-48	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]