PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 142aa MW: 15922.8 Da PI: 7.9226 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 36 | 108 | 21 | 99 |
HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+++hg++ ++ +l +sg +W+v+l +k++g+++l++GW eF + L+ g +vF++dg+s+f +v +f+k Gh_D03G1682 36 LFVKNHGNSMSSP--AMLSVPSGAVWKVEL--TKSDGKIWLENGWLEFSNHYSLDIGHLLVFRYDGNSNF--RVIIFDK 108 5888888775555..9999***********..**********************************9999..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.1E-7 | 22 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-18 | 35 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.04E-12 | 37 | 107 | No hit | No description |
PROSITE profile | PS50863 | 11.547 | 37 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-11 | 37 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-18 | 44 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MASSSHQQGN SHLKFISSSP YSLKIILQDT IQNGKLFVKN HGNSMSSPAM LSVPSGAVWK 60 VELTKSDGKI WLENGWLEFS NHYSLDIGHL LVFRYDGNSN FRVIIFDKSA SEIQYPYTSN 120 NHSRSSEILK LNINESKDDG SI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016690612.1 | 4e-97 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2QM18 | 3e-97 | A0A0D2QM18_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020300.1 | 5e-98 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 8e-27 | B3 family protein |