PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1679
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 272aa    MW: 30581.3 Da    PI: 10.6043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1679genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-101462241799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p+ f++e g+ k es+t +++d++g    +k   + +++++ ++ GW +F + n++ +gD+++F++  +++ + +v+v++k
  Gh_D03G1679 146 YIPRCFVKETGMGK-ESIT-VIKDPRGGMLPMKT--TVSREQVRFGCGWFQFLHGNEIAAGDTLLFEHFPNTGNSIHVQVINK 224
                  79********7775.4444.559***********..99*****************************9988999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.541568IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-71068IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-81068No hitNo description
Gene3DG3DSA:2.40.330.105.2E-71468IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-12118224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-13127224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.291130225IPR003340B3 DNA binding domain
CDDcd100173.84E-8146223No hitNo description
PfamPF023628.9E-8146224IPR003340B3 DNA binding domain
PROSITE patternPS003540246256IPR000637HMG-I/HMG-Y, DNA-binding, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MARKSVDLSK VLVGDFDKKL RIPPAFVKYV SKGNVTTMFT LYSDSGNSWR VKVKVQQGSF  60
FFNTGWSNSM LDVFIYNRTA CAKNIILAAK KPKGRPPRVS RQIEQTPNKK PRTAPRAQEV  120
EFVSEVTPKH VSLQMVVMEY HKYYGYIPRC FVKETGMGKE SITVIKDPRG GMLPMKTTVS  180
REQVRFGCGW FQFLHGNEIA AGDTLLFEHF PNTGNSIHVQ VINKGGNGNC GRLNKQANPC  240
EDTSLAAKRP RGRPRKQIEE PPSTKYAPST AF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247255KRPRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638207.11e-154PREDICTED: uncharacterized protein LOC108479878
TrEMBLA0A2P5W0G91e-137A0A2P5W0G9_GOSBA; Uncharacterized protein
STRINGGorai.003G020400.11e-116(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620