PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1581
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24325.2 Da    PI: 6.5179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1581genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1864112355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Gh_D03G1581  64 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 112
                  9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1262112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3263121IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2263121IPR016177DNA-binding domain
SMARTSM003801.3E-3663126IPR001471AP2/ERF domain
PROSITE profilePS5103223.64463120IPR001471AP2/ERF domain
CDDcd000186.44E-3464121No hitNo description
PRINTSPR003678.3E-116475IPR001471AP2/ERF domain
PRINTSPR003678.3E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEVPLQAEHE LELETQSSSS SSSSSSSSPL VIKSNKIQKL TQKTNENKRK FNNGDELEGK  60
HPAYRGVRMR QWGKWVSEIR EPRKKSRIWL GTFPTAEMAA RAHDVAALAI KGKSAYLNFP  120
DIAHELPRPV SSSPKDIQAA AAKAAALSYD QMAPRSPSCT AYSTVSHDST SSSSNDKDDA  180
FIDLPDLLMD MNHQMYEFWG VDINGFLGSE EPRLWEYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1853120472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472671.11e-162PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP36e-54ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2P5S5U41e-161A0A2P5S5U4_GOSBA; Uncharacterized protein
STRINGGorai.003G175100.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]