PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1483

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 642aa MW: 71327.3 Da PI: 6.0076

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1483	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	409.5	3.2e-125	258	627	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL +c+ea+ s++ +++++++++l elasp+g+ + Rl+ay+teALa r++r +++++++ +p+e + + +++ +al+l+++v+Pilkf h+t Gh_D03G1483 258 LIRLLAACVEAIGSKNIAAINHFISKLGELASPKGTVISRLTAYYTEALALRVTRVWPHIFHITTPRELD-RLDDDNGTALRLLNQVTPILKFVHFTS 354 5789************************************************************9998.568888999************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg++rvHi+Dfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+ sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+ Gh_D03G1483 355 NEILLRAFEGKDRVHIVDFDIKQGLQWPSLFQSLASRTNPPSHVRVTGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHA 447 ***********************************************....***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++aVn+v+qlh++l + +++L l++s++P v+++eqe++ n ++ +r++++l+yysa+fds++ +lp es rik+E++ ++rei Gh_D03G1483 448 KENESIAVNCVFQLHKTLYDGNGGV--LRDFLGLIRSINPIAVIIAEQETENNILNLEARVANSLRYYSAIFDSIDFTLPLESPVRIKIEEM-FAREI 542 *************96655444..489**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 +n++aceg++r+erh+++ekWr+ +e+ GFk + +++++ q ++ll+++ s+ y+v+++ +g+l+l W d+pL++vSaW+ Gh_D03G1483 543 RNLIACEGSDRFERHTSFEKWRKLMEQGGFKCMGITDRELVQSQMLLKMYTSENYSVKKQgpdgdDGALTLSWLDEPLYTVSAWT 627 ***********************************************99977777779****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.148	232	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-122	258	627	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE TSAVQFQACH FQTSMSTQRL DLPCNFSHKE TSKSQTIRPA 60 VESKAKTSSC SIKQNIRLPP LTTTSAQNPF EGRIEIKGKS LKRYAEQGLV DDETVINMAK 120 RKKGSSDDEK PGDDHGGLSL GQLGAGNFWF QPSLSGDEER GTPPLPLSNN PWIDSVITEL 180 TDVGEKDVET IHRPGKEASG SGSTSTPSES HSLGPPLNVQ AQEHERGNGS GNPYPHEGAR 240 LGANEEEINH REHEGFELIR LLAACVEAIG SKNIAAINHF ISKLGELASP KGTVISRLTA 300 YYTEALALRV TRVWPHIFHI TTPRELDRLD DDNGTALRLL NQVTPILKFV HFTSNEILLR 360 AFEGKDRVHI VDFDIKQGLQ WPSLFQSLAS RTNPPSHVRV TGIGESKQEL NETGDRLAGF 420 AEALNLPFEF HPVVDRLEDV RLWMLHAKEN ESIAVNCVFQ LHKTLYDGNG GVLRDFLGLI 480 RSINPIAVII AEQETENNIL NLEARVANSL RYYSAIFDSI DFTLPLESPV RIKIEEMFAR 540 EIRNLIACEG SDRFERHTSF EKWRKLMEQG GFKCMGITDR ELVQSQMLLK MYTSENYSVK 600 KQGPDGDDGA LTLSWLDEPL YTVSAWTPID VAGSSSSFSQ PS

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE TSAVQFQACH FQTSMSTQRL DLPCNFSHKE TSKSQTIRPA  60
VESKAKTSSC SIKQNIRLPP LTTTSAQNPF EGRIEIKGKS LKRYAEQGLV DDETVINMAK  120
RKKGSSDDEK PGDDHGGLSL GQLGAGNFWF QPSLSGDEER GTPPLPLSNN PWIDSVITEL  180
TDVGEKDVET IHRPGKEASG SGSTSTPSES HSLGPPLNVQ AQEHERGNGS GNPYPHEGAR  240
LGANEEEINH REHEGFELIR LLAACVEAIG SKNIAAINHF ISKLGELASP KGTVISRLTA  300
YYTEALALRV TRVWPHIFHI TTPRELDRLD DDNGTALRLL NQVTPILKFV HFTSNEILLR  360
AFEGKDRVHI VDFDIKQGLQ WPSLFQSLAS RTNPPSHVRV TGIGESKQEL NETGDRLAGF  420
AEALNLPFEF HPVVDRLEDV RLWMLHAKEN ESIAVNCVFQ LHKTLYDGNG GVLRDFLGLI  480
RSINPIAVII AEQETENNIL NLEARVANSL RYYSAIFDSI DFTLPLESPV RIKIEEMFAR  540
EIRNLIACEG SDRFERHTSF EKWRKLMEQG GFKCMGITDR ELVQSQMLLK MYTSENYSVK  600
KQGPDGDDGA LTLSWLDEPL YTVSAWTPID VAGSSSSFSQ PS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-73	242	628	1	380	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716192.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1U8LNQ0	0.0	A0A1U8LNQ0_GOSHI; scarecrow-like protein 28
STRING	Gorai.003G162400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein