PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D03G1383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24098.4 Da PI: 8.4862 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.3e-41 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l++el++++ Gh_D03G1383 40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQNLQSELNAIR 137 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Gh_D03G1383 138 AE 139 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.85 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-42 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MSRDWERLDE IGKKIKTDAV GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY 60 FSPHEPHKFA AVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV 120 TLQQQMQNLQ SELNAIRAEI LKYKIREVTN SNILPSTHPH THTHATLVSG GAVSVAASSS 180 PLPPPPSIVV STSSSSSASS LYTSATSATG YSSISSDNVP FFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 32 | 148 | 3 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 32 | 148 | 3 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471717.1 | 1e-163 | PREDICTED: LOB domain-containing protein 15 | ||||
Refseq | XP_016713515.1 | 1e-163 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 4e-80 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2RN13 | 1e-162 | A0A0D2RN13_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LG24 | 1e-162 | A0A1U8LG24_GOSHI; LOB domain-containing protein 15-like | ||||
STRING | Gorai.003G151800.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-80 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|