PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 716aa MW: 79179.1 Da PI: 8.5257 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 108 | 209 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ + ++ + t++ d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + ++++ Gh_D03G1293 108 FAKTLTQSDANNGGGFSVPRYCAETIfppldytEDPPVQ--TVVAVDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLR--SENGG 201 89****************************997666656..8************************************************4..47777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Gh_D03G1293 202 LCVGIRRA 209 8****996 PP | |||||||
2 | Auxin_resp | 118.3 | 6e-39 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pra+t+eF+vk+++v++a++v+++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Gh_D03G1293 257 AATLAASGQPFEVVYYPRATTPEFCVKASSVKAAMRVPWCCGMRFKMAFETEDSSRISWfMGTVSSVQVVDPIRWPNSPWRLLQ 340 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-38 | 100 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-29 | 106 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.70E-22 | 107 | 208 | No hit | No description |
SMART | SM01019 | 7.3E-23 | 108 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-21 | 108 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 108 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-33 | 257 | 340 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.622 | 574 | 650 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MKESEKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR 60 VASLKFMADT ETDEVYAKIL LMPLPNTELD LENVAVFGSD NAEKPASFAK TLTQSDANNG 120 GGFSVPRYCA ETIFPPLDYT EDPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF 180 VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN 240 GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRATTPEF CVKASSVKAA MRVPWCCGMR 300 FKMAFETEDS SRISWFMGTV SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV 360 ELVSNVPAVH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP 420 AGIQGARHAQ FGLSLSDLHL NNKLQSGLFL PSFQRFDPHS RISDGIMMAR RPNGTDNLSC 480 LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT 540 KDTSDGSRSS LEKSSTAGFL WHQDYRSAET GHDIGHCKVF LDSEDVGRTL DLSVLGSYEE 600 LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFRYQ FKKPIHPFRS FDLALGLYLH 660 NLPMLYCSAF MKTAKRLTIR MDSSNETVAR SWLTGIRTAE NGLGGPSKRG PLSIVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-85 | 8 | 361 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1511 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ003610 | 0.0 | DQ003610.1 Gossypium raimondii putative auxin response factor 10 (ARF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471518.1 | 0.0 | PREDICTED: auxin response factor 10-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0D2QKM0 | 0.0 | A0A0D2QKM0_GOSRA; Auxin response factor | ||||
STRING | Gorai.003G142500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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